KEGG   Pseudomonas sp. TCU-HL1: THL1_5210
Entry
THL1_5210         CDS       T05373                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
pset  Pseudomonas sp. TCU-HL1
Pathway
pset02024  Quorum sensing
pset03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pset00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    THL1_5210
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    THL1_5210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pset03019]
    THL1_5210
   03036 Chromosome and associated proteins [BR:pset03036]
    THL1_5210
Messenger RNA biogenesis [BR:pset03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     THL1_5210
Chromosome and associated proteins [BR:pset03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    THL1_5210
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AOE87757
UniProt: A0A1B3EDZ0
Position
complement(5637422..5637676)
AA seq 84 aa
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVRLPSASEQEQPEPGNT
NT seq 255 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacctcaataccctgcgtaaggaacgcgta
ccggtttccatctatctggtgaacggcatcaagctgcagggccagatcgaatccttcgac
cagttcgtgattctgctgaagaacactgtcagccagatggtctacaagcacgctatctcc
actgtggtaccaagtcgtccggtacgcctgcccagcgcttccgagcaggagcagcctgag
ccgggtaacacctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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