KEGG T02969: U771

Pseudomonas sp. TKP: U771_09705

Entry

U771_09705        CDS       T02969

Name

(GenBank) RNA helicase

K05592

ATP-dependent RNA helicase DeaD [EC:3.6.4.13]

Organism

psk Pseudomonas sp. TKP

Pathway

psk03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:psk00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    U771_09705
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psk03019]
    U771_09705
   03009 Ribosome biogenesis [BR:psk03009]
    U771_09705
Messenger RNA biogenesis [BR:psk03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     U771_09705
Ribosome biogenesis [BR:psk03009]
Prokaryotic type
  rRNA helicases
   U771_09705

SSDB

Motif

Pfam:

DEAD Helicase_C DbpA ResIII AAA_19 BscB_a-b

Other DBs

NCBI-ProteinID:

AHC34484

Position

2095372..2097045

AA seq 557 aa
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED

NT seq 1674 nt +upstreamnt +downstreamnt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaacattcttgctgcc
gtcattgcgaccggctacgaagaaccttcggcgattcagcagcaatcgatcccgatcatc
atggccggccaggacatgattggccaggcgcaaaccggtaccggcaaaaccgccgcgttc
gccctgcctatcctgcactgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaactcgtgagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgccgggcgttaccgttgtggccgtctatggcggtgcgccaatgggcccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccaccccgggtcgcctgtgtgaccacctg
cgtcgtgacgagaaagtcctgtcgaccgtgaaccacctggttctggacgaagctgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggcgctgccaccgacc
cgtcagaccgtactgttctcggccaccctgccacagtcgatccgtgccattgccgaacgc
catctgcgcgatccgcaacacgtgaagatccagaccaagacccagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcttgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctcgaagccaaaggctacaaagccgctgcgctgaacggtgacatcgcc
cagaaccaacgtgagcgcgtgatcgactccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgcccgtggcctcgacgttccacgtatcacccacgtgttcaacgtt
gacatgccttacgatccagagtcctacgttcaccgtattggccgtactggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccgcgtgagcgccgcatgctgcaagtgatc
gagcgtgtcaccggccagaaggttgccgaggtccgcctgccggatgcccaggccgttctc
gatgcccgcatcaagaaactgaccaacagcctggcgccgctggtggctgacgctgagtcg
acccacggcgacctgctggaccgcctgaccgccgatatcggttgcaccccgcgtgccctg
gccgcagccctgctgcgcaaggccaccaacggtcaggccctgaccctggcagccatcgag
aaagaacgtccactggttccgaacagcgcgccacgcggtgatcgtccagagcgttcgggc
gaccgtccagaccgtggtgatcgtgagcgtcgtgctccggtcccattggctgaaggtcgt
gctcgttgccgtaccgcgctgggcgcgcgtgacggtatcgcggccaagaacctgctgggc
gctatcctcaacgagggtggcctggcacgtgaagccatcggtcgtatccaggtccgtgac
agcttctccttggtggaactgccggaagacggtctggaaaaactgctgaccaagctgaaa
gacactcgcgttgccggtaagcagctcaaactgcgtcgctaccgcgaagattga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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