KEGG T01374: PSM

Pseudoalteromonas sp. SM9913: PSM_B0287

Entry

PSM_B0287 CDS T01374

Definition

(GenBank) ribosomal large subunit pseudouridine synthase A (pseudouridylate synthase, 23S RNA-specific)

K06177

tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]

Organism

psm Pseudoalteromonas sp. SM9913

Brite

KEGG Orthology (KO) [BR:psm00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:psm03009]
    PSM_B0287
   03016 Transfer RNA biogenesis [BR:psm03016]
    PSM_B0287
Enzymes [BR:psm01000]
5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.28  tRNA pseudouridine32 synthase
     PSM_B0287
    5.4.99.29  23S rRNA pseudouridine746 synthase
     PSM_B0287
Ribosome biogenesis [BR:psm03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    PSM_B0287
Transfer RNA biogenesis [BR:psm03016]
Prokaryotic type
  tRNA modification factors
   Psudouridine synthases
    PSM_B0287

SSDB

Motif

Pfam:

PseudoU_synth_2

Other DBs

NCBI-ProteinID:

ADT70327

Position

II:complement(324515..326206)

AA seq 563 aa
MLTANFTAMSNPASCFTVFDENVDSLALPEQFTFPFYYKPHPLAVVAAQQLQQQLKKLDK
AILDTDDIDAGKMFGVLVVQNQAQQLGFISAYSGQIAGIDEQLNFAPNVALKHIDDAVFS
QQSQIINAINAQITALENSEDYQALEQQLATARKNYEQQLVAKQQAMQVTRKQRKEQRQT
GQEQLNADDFEQLKTTLAGQSIVEKKQLQALKQDWQTQITALEQTQAAMLGEINGLKKRR
KTLSKNLQKKLFAQYQFLNAHGEVTDLNAIFAKLPEHTPPSGAGDCAAPKLLQYAYKHDL
KPVAMAEFWWGAPPKSAIRHHLHYYPSCYSKCQPILGHMLKGLNVEENPLLTNPAKGKDL
TIVYQDDDLLVINKPAEFLSVPGINIDDSVYMRIKTQFPAASGPLIVHRLDMSTSGLLII
ALNKRAHKALQKQFIERTIEKRYVALVAGNITENSGVINLPLVLDFDDKPRQMVCYKTGK
PSLTTWHVLERKNNTTRLQLYPKTGRTHQLRVHCAHQLGLNTPIVGDTHYGEEAERLHLH
AEYLAFTHPISHQRLEFEVAADF

NT seq 1692 nt +upstreamnt +downstreamnt
ttgttaactgctaattttactgccatgtcaaaccctgctagctgctttaccgtttttgat
gaaaacgtcgattcccttgctctgcctgagcagtttacatttccattttattataaaccg
caccctttggccgttgtcgctgcacagcaattacaacagcaattaaaaaagctagataag
gctattttagatacggatgatattgatgcgggtaaaatgtttggtgtgctcgtcgttcaa
aatcaggcgcaacaactgggatttattagcgcctattcggggcaaatagcgggcatagat
gagcaactgaattttgcacctaatgtggcacttaaacacatagacgatgctgtatttagt
cagcaaagccaaatcattaacgccattaatgcgcaaattacggcattagaaaacagtgaa
gattatcaagcccttgagcagcaattagctacagcacgtaaaaattatgaacagcaactt
gtagccaaacaacaagccatgcaagtgacccgcaaacagcgaaaagagcaacgccaaact
ggccaagagcaactcaatgccgatgactttgaacaacttaaaacaaccttagctgggcaa
agtattgttgagaaaaaacaactgcaggcattaaagcaagactggcaaacgcaaattaca
gcgcttgagcaaacccaagcagctatgctgggtgaaattaacggattaaaaaagcgccgc
aaaacactctcaaaaaacctacaaaagaaattatttgctcaataccaatttttaaatgca
cacggtgaagtgaccgatctgaatgctatttttgccaaacttcctgagcacactccacct
tcgggagcgggggattgcgccgcccctaaattattacaatatgcatacaagcacgattta
aaaccagtggctatggccgaattttggtggggtgcaccgcctaaatcagcaattaggcat
cacttacattattacccatcgtgttatagcaaatgccaacccattttaggtcatatgcta
aaaggcttaaatgttgaagaaaatccattactaacaaaccctgcaaaaggaaaagactta
actattgtttatcaagacgatgatttactggtaataaacaaacccgcggagtttttatcg
gtgccagggattaatattgatgattcagtgtacatgcgtataaaaactcagttccccgcg
gcttctggcccacttattgtgcatcggttagatatgtcgacctcagggctgttaattatt
gcgcttaataagcgcgcgcataaagcgctgcaaaaacagtttattgaacgcacaattgaa
aagcgttacgttgctttagtggcgggcaatattactgagaatagcggagtgattaattta
cctcttgtgctcgactttgatgataaaccacgccaaatggtgtgttataaaaccggtaaa
ccgtcgttaacaacatggcatgtactggagcgcaaaaacaacaccacccgactgcagtta
taccctaaaacagggcgtacacatcagttacgggtacattgcgctcatcaattaggttta
aataccccgatagttggcgatactcattatggtgaagaggcagagcgcttacatttacat
gccgagtatttagccttcacccaccctatttctcatcaacgtttagaatttgaagtagcc
gctgatttttaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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