KEGG   Pseudopedobacter saltans: Pedsa_0152
Entry
Pedsa_0152        CDS       T01430                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
psn  Pseudopedobacter saltans
Pathway
psn03030  DNA replication
psn03410  Base excision repair
psn03420  Nucleotide excision repair
psn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:psn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Pedsa_0152
   03410 Base excision repair
    Pedsa_0152
   03420 Nucleotide excision repair
    Pedsa_0152
   03430 Mismatch repair
    Pedsa_0152
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psn03032]
    Pedsa_0152
   03400 DNA repair and recombination proteins [BR:psn03400]
    Pedsa_0152
Enzymes [BR:psn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Pedsa_0152
DNA replication proteins [BR:psn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Pedsa_0152
DNA repair and recombination proteins [BR:psn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Pedsa_0152
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Pedsa_0152
   MMR (mismatch excision repair)
    DNA ligase
     Pedsa_0152
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Pedsa_0152
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT BRCT_2 HHH Dna2 Auto_anti-p27 RNA_ligase
Other DBs
NCBI-ProteinID: ADY50738
UniProt: F0SDL1
Position
192199..194211
AA seq 670 aa
MSLFEIKEKIDALVTELNRHNYNYYQLAMPTISDYEFDQKLKELEKLEQENPAFIRIDSP
TQKVGGEITKTFKTVTHKWPMLSLGNTYNEQDLVDFDQRIRKIIGDNFEYVCELKFDGLS
ISLTYENGDLIRAVTRGDGTKGDEVTTNIKTIRTIPHRIKGEGILPSFEIRGEVFMHKAA
FEKLNQERIENGEQPFANPRNFASGTVKMQNSAEVAKRPLDCFLYFLYADKKPFPTHWES
LHAVEKWGFKISQESKLCKNLAEVFDFITYWDQERFKLSYDIDGIVIKVNSYAQQEELGF
TAKSPRWAISYKFKAAEVETELIEVTYQVGRTGAVTPVANLKPVLLAGTTVKRATLHNAN
EIERLDLYEGDTVLVEKGGEIIPKIMGVNLDKRKSDAQKIHYITHCPECGTELVRKVGEA
VHYCPNDEGCRPQIIGKMQHFISRKVMNIDGIGDETIETLYSKGFIRHISDIYNLKQDED
SLKQMDRFGEKSVTNMLLGIENSKQMPFEKVLFGLGIRYVGETVAKKLALHFKNIQNLQH
ASFEQLIEAEEIGERIAQSILEYFSDETHINEINKLITYGLQFEIEEKEVILQSESLLGQ
TFLISGVFENHSREELKKIIEDNGGKMLSSISAKLNYLVAGDNMGPSKLEKANKLNIPII
SEQDLFNLLG
NT seq 2013 nt   +upstreamnt  +downstreamnt
atgtcgcttttcgaaataaaggagaaaatagatgcgctggtaaccgaactgaaccggcac
aattataactattatcagttggccatgccaactatttccgactatgagtttgatcagaaa
cttaaagaactcgagaagttagagcaggaaaatcccgcatttattcgtatagattctccc
acccaaaaggttgggggagaaattaccaaaacatttaaaacagttactcataaatggccc
atgctttctttgggcaatacttataatgaacaggatttggttgattttgaccaaaggata
aggaagattataggtgataattttgagtatgtatgtgagctgaaatttgatggtttatct
atcagccttacttacgagaatggggatttaattagagcggtaacacgtggcgacggaact
aagggagatgaggttacgacaaatatcaagacaatcaggacaattcctcatcgtataaaa
ggcgagggaattcttccttcgtttgaaataaggggtgaagtttttatgcataaagccgct
tttgagaaactaaatcaagagcgcatagaaaatggtgaacagccttttgcaaatcccaga
aattttgcatccgggacggttaaaatgcagaattctgcggaagtagccaaaagaccgtta
gattgttttctttattttttatatgctgacaaaaagccttttcctacacattgggaaagt
ttacatgcggtagaaaagtggggatttaagatttcacaggagtccaaactttgtaaaaat
ttagcagaggtttttgatttcattacttattgggatcaggaacgctttaagctttcttat
gatatagacggaatcgttatcaaagtgaatagttatgcgcaacaagaagagcttggtttt
acagctaaatctcctcgttgggccatcagctataaatttaaggctgcggaagtggaaacg
gaactgatagaagtaacctatcaggttgggcgtacaggagcagtgacacctgtggctaac
ttaaaaccggttcttttagcgggaacaacggttaaacgcgctacgctccataatgccaat
gaaattgaacgtttggatctttacgaaggtgataccgttttggtcgaaaaaggaggcgaa
attattcctaaaataatgggggttaatttagataagcggaaatcggatgcacaaaaaatt
cattatatcacccattgtccggaatgtggaactgaactggttagaaaagtgggagaagct
gttcattattgcccaaatgatgaaggttgcaggccacaaattatagggaaaatgcagcat
ttcattagccgtaaggtaatgaatattgatggaattggagacgaaactatagaaacttta
tattctaaaggattcattagacatatcagtgatatctataatcttaagcaagatgaggat
agtttgaagcaaatggaccggtttggggaaaaatctgtcaccaatatgttattgggtatt
gaaaattctaaacagatgccttttgagaaagtgctgtttggtttgggaataagatatgta
ggcgaaacggtagccaaaaaattagctttacattttaaaaatatccagaatttacaacat
gccagtttcgaacaattgatagaagcagaggaaattggagaaagaatagcgcaaagtatt
ttagaatatttttcagacgaaactcatattaatgaaataaataagttaattacatatggt
ttacagtttgaaattgaagaaaaggaagtaattttacaaagtgaaagtttgttgggacaa
acctttttgatatcaggtgtttttgaaaaccatagtagagaagagcttaaaaagattata
gaggataatggtggtaagatgctaagtagtatttccgccaaattaaactatcttgtagcc
ggagacaatatgggtccttctaaattggaaaaggcaaacaaacttaacattccaattata
agcgaacaggacttgttcaacttattgggataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (65)   

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