KEGG   Psychrobacter sp. G: PSYCG_02015
Entry
PSYCG_02015       CDS       T02715                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pso  Psychrobacter sp. G
Pathway
pso03030  DNA replication
pso03410  Base excision repair
pso03420  Nucleotide excision repair
pso03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pso00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PSYCG_02015
   03410 Base excision repair
    PSYCG_02015
   03420 Nucleotide excision repair
    PSYCG_02015
   03430 Mismatch repair
    PSYCG_02015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pso03032]
    PSYCG_02015
   03400 DNA repair and recombination proteins [BR:pso03400]
    PSYCG_02015
Enzymes [BR:pso01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     PSYCG_02015
DNA replication proteins [BR:pso03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     PSYCG_02015
DNA repair and recombination proteins [BR:pso03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     PSYCG_02015
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PSYCG_02015
   MMR (mismatch excision repair)
    DNA ligase
     PSYCG_02015
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      PSYCG_02015
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT 5_3_exonuc RNA_pol_A_CTD
Other DBs
NCBI-ProteinID: AGP47977
Position
427721..429796
AA seq 691 aa
MTDPIAPLTSKDINTAKSAANEDAIVAQMRTFIDALKKHNYAYYVLDNPILEDSEYDQLR
RSLLALEEQYPDLIQPDSPINQVGDMPLSAFTQVTHDIPMLSLGNVFEYDDLRDFMRRVN
DRLSVAQQSPEYEMELKLDGLAVSLKYAYGKFVQAVTRGDGQTGEDITQNAKTIRNLPLW
LAAASDIPLLEVRGEVLMPKAGFERLNRLAEEKGDKTFANPRNAAAGSLRQLDPAIAASR
PLAFYCYSVNQGLPEHIKTQSAALAWLKTIGFTVSAVEVVQNPRESQAYYESVKETRGEL
PFEIDGMVIKVNSLALQQQLGFLSREPRWATAYKFPAETVMTRLHAIEWQVGRTGAITPV
GKLEPVKVGGVTVSNVTLHNFGEIQRLDVRAGDMVSVHRAGDVIPKVTRVWTDQRPENSE
PVQLPSTCPVCDSPVVLPKDEALARCTGGLFCPAQQVEALIHFVSRRAMDIDGLGASWLV
SFFEHGLVKTVADLYQLHNHQDELITLEKLGEKSVQNILSAIEASKHTTLARFIYALGIR
GVGETTAQNLAQQFGDLDSLMAADIEKLLQTPDVGAITAELAYKFFRAPHNIEVITALRE
AGVHWDKVEQVVSEGLPLDGQTWVITGALDSMARDEAKAKLQALGAKVSVSISAKTTALL
AGEKAGSKMAKAEKLGVKVVGEEEFLAMVGE
NT seq 2076 nt   +upstreamnt  +downstreamnt
atgactgaccctattgcaccgcttacctctaaagacatcaatactgcaaaatctgcagca
aacgaagatgctatcgtggctcaaatgcgcacgttcattgatgcccttaaaaagcacaat
tatgcctattatgtgctcgacaatcccatcttagaagacagcgaatacgatcagttgcgt
cgctctttattggcgcttgaagaacaatatcccgatttaatacagccggatagcccaatc
aatcaagttggcgatatgccgctatcggcatttacgcaagtcacccatgatattccgatg
ctgtcgcttggcaacgtctttgaatacgatgatttgcgtgattttatgcgccgcgttaat
gaccgcttaagcgtggctcagcaaagccctgaatacgagatggagctaaagctggatggt
ttggcagtatcgctcaaatatgcttatggcaagtttgtccaagcggtgacacgcggtgat
gggcaaacgggcgaggacatcactcaaaatgccaaaaccattcgcaatttgccactttgg
ctcgcggctgcaagcgatatccccttattggaagtacgcggtgaagtgctgatgccgaaa
gcgggctttgagcgtttgaaccgccttgctgaagaaaagggagacaaaacttttgccaat
ccacgcaatgctgccgctgggagtttgcgtcagcttgaccctgccattgccgctagccgt
ccgctcgcgttttattgctattctgtcaatcaagggttacctgagcatatcaaaacccaa
tcagcagcgcttgcatggctaaaaaccattggctttaccgtcagtgcggtcgaagtagtg
caaaatccacgcgagtctcaagcctattatgaatcggtaaaggagacacgtggcgagctg
ccgttcgagattgatggtatggtcatcaaggtcaatagcttggcattacagcaacagctt
ggttttctatcgcgtgagccgcgctgggcaaccgcttataaattccctgccgaaactgtc
atgacacgcttgcacgctatcgagtggcaagtcggacgcactggtgccattacgcccgtt
ggtaaattagaacccgtgaaagtcggcggcgtcacggtcagcaatgtcaccttgcataac
tttggcgagattcagcgcttggatgtgcgcgcaggcgatatggtgagcgtccaccgtgca
ggcgatgtgattcctaaagtgacccgtgtttggacagatcaacgtccagaaaattctgaa
ccggtacagctaccgtcgacctgcccagtatgcgactcacctgtggtgctgcccaaagat
gaagcgttggcgcgttgcaccggtgggctattttgtcccgcgcagcaggtcgaggcgctc
attcactttgtctcgcgtcgggcaatggatatcgatggcttaggcgcaagttggctggtc
agcttttttgagcacggtttggtcaagactgtcgccgatctttatcaattgcacaatcat
caagacgagctgattacgcttgagaaactgggcgaaaaatcggtacagaatatcctcagt
gctatcgaagccagtaagcatacgacattggctcgctttatctatgcgctgggtattcgc
ggtgttggtgagacgactgcgcagaatcttgcccaacaatttggcgaccttgatagccta
atggctgctgatatcgaaaagctactgcaaacgcctgacgtcggtgcgatcaccgctgaa
cttgcttataaattcttccgcgcaccacataatatcgaagtcataacggcattacgagaa
gctggcgtgcattgggataaggttgagcaagtggtgtcagagggattgccgctcgatggt
caaacatgggtgattactggcgcgcttgatagcatggcacgcgatgaagccaaagccaaa
ctgcaagcgctgggtgccaaagtctcagtcagtatttcggcaaaaaccaccgcgctattg
gcaggtgagaaggctggctcgaaaatggctaaagctgaaaaacttggcgttaaagtagtg
ggtgaagaagagtttttggcgatggttggggagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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