KEGG   Papaver somniferum (opium poppy): 113275046
Entry
113275046         CDS       T05758                                 
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
  KO
K15172  transcription elongation factor SPT5
Organism
psom  Papaver somniferum (opium poppy)
Pathway
psom03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:psom00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    113275046
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psom03021]
    113275046
   03019 Messenger RNA biogenesis [BR:psom03019]
    113275046
Transcription machinery [BR:psom03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     113275046
  RNA polymerase I system
     113275046
Messenger RNA biogenesis [BR:psom03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     113275046
SSDB
Motif
Pfam: Spt5-NGN KOW Spt5_N Myosin_N CTD DUF4438
Other DBs
NCBI-GeneID: 113275046
NCBI-ProteinID: XP_026380263
Position
4:29878402..29881879
AA seq 820 aa
MRMAKDKTLVQNRDDEEEFSEKEEYKIHGRRKASNGGRGGGKSRGGSSRKRMRSTFVDDV
AEEADDDEEEEEDDDYYENYGESRKKRKQNSAAAPFIDDQAIVASSDEDESTDGEGEDPF
IVSNDEQEDDDDRRKGHGYKPHPWFSDGEEDIEEIERRIQQLYQSYDVEIDEADINDVEQ
QSRLPSVKDSKLWTVKCAIGHEREAAFCLMQKCAIDQPGMHIRSAIALDYLQTYIYVEAD
KEAHVREACKGLKMLDTRKIVLVPIKEMTDVVSAKGKALDIVKDMWVRMKIGIYKGDIAK
VVSVPDMRQRVMLKLIPRVDLQAVADKLDGRKVSKKAIIPPQRLVNSGEARNLNIPVDSR
RERSTGISFDVIDGKTFKDGFLYKTVSEKSIEYQNIQPSFNELERFCESGMSTSLENRRK
FHYMKGDAVIVVKGDLINLMGWVEKVEDDNLHIKPNRKDLHTTIVVNENYVCKYFKLGDH
VKVVSGAHEGATGTVIKVNSNVLILVSDATREDISVFADNVVDSSEVAPGATTRIGDYEL
HDLVMLADMSFGMIIRLESESLQVLKGDPDRPVVAVVKLRDIKYKIDDRRNTAKDRSRND
VSVKDIVKILMGPCQGKQGSVEHIRGGILFTNDRHHMEHSGFICVQAESCIVMRGSNAKV
SLPSRCATSRQTAYIPPSPRRYSTGPPLDSGVRHRGAAAGRGGRDNFVGSIVKIRLGNFK
GCGGRVVSRNDQLVRVELESQMKTVTVKREEISVDAGVFTSSSEAPQQGIGSQTPMHRAQ
TPLHPYMTPMRDQGGETPVHSGMRTPMRHQAWNPYAISTY
NT seq 2463 nt   +upstreamnt  +downstreamnt
atgagaatggcgaaagacaaaacccttgttcagaatcgtgatgatgaagaggaattttca
gaaaaagaagagtataagattcacggcagaaggaaagcaagtaatggcggtcgtggcggt
ggtaaaagtaggggtggttcgagtaggaaacgaatgaggtcaacatttgtagatgatgtt
gctgaagaagctgatgacgatgaagaagaagaggaggatgatgattattatgaaaattat
ggagaaagtaggaagaagaggaaacaaaattctgctgctgcgccattcattgacgaccaa
gcaattgttgctagtagtgatgaagacgagtcgactgatggagaaggagaagatcccttt
atagtttctaatgatgaacaagaagatgatgatgacaggaggaagggacatggatacaag
cctcatccttggttttctgatggtgaagaagatatcgaagagatcgagagaagaattcaa
caactgtatcaaagctatgatgtagaaattgatgaggcagatatcaatgatgtcgagcag
caatctcgtttgccgtcagttaaggattccaagttgtggacagtgaaatgtgcgattggt
catgagcgagaggcagctttttgccttatgcagaaatgtgccattgatcaacctgggatg
catataaggtctgccatcgctcttgattatctccagacctacatctacgtcgaagctgat
aaggaggcacatgtcagagaggcttgcaaaggtctcaaaatgttagataccagaaaaata
gtgcttgtgccgattaaagagatgaccgatgtggtttcagcaaaaggcaaagcccttgac
attgtgaaggatatgtgggtgcgaatgaagatcgggatatacaaaggggatattgcaaaa
gttgttagtgtgcctgatatgcgacaaagggttatgcttaagctaattccaagggttgac
ttacaagctgttgccgacaaattagatggtagaaaagtttcgaagaaggcaatcattccg
cctcaacgtcttgtgaattcaggtgaagcaagaaaccttaacataccagtagactctagg
agggaacgaagcactggaatttcttttgatgtgattgatgggaagacgtttaaagatggt
ttcctatataaaacagtatcggagaaatcaattgaataccaaaatattcaaccatctttc
aatgagcttgaaagattttgtgagtctggtatgtccacttcactggaaaacaggagaaaa
ttccattatatgaagggtgatgctgttattgttgtcaaaggagatctcataaatctgatg
ggatgggttgagaaagtggaagacgataacctccatatcaaaccaaatcggaaggacctg
catacaacaattgttgtgaatgaaaattatgtttgcaaatacttcaagcttggggatcat
gtgaaggtcgtctctggtgctcatgaaggtgcaaccggtactgtcattaaggttaacagt
aatgtgctcattttagtatctgatgcgactagggaggatatcagtgtttttgctgacaac
gtcgtggatagctctgaagtagctcctggagctactaccagaattggagattatgaatta
catgaccttgtcatgcttgctgacatgagctttgggatgattatacgattagagagtgaa
tcacttcaagtgctgaagggagatccagatagacctgtggttgcagtagtgaagttgagg
gacatcaaatataagatagatgataggaggaataccgccaaagatcgttccagaaatgac
gtgtctgtgaaagatattgtgaagattctcatgggtccttgccaagggaaacaaggttct
gtcgaacatatacgtggaggtatattgttcacaaatgaccgccatcacatggagcattct
ggttttatttgtgtgcaagcagagtcttgcatagtaatgagaggctcaaatgccaaggtt
tccctgccctcaagatgtgcaacttcaagacagacagcttatattcccccttcaccaaga
agatattctacaggacctccattagattctggggtgagacataggggagctgctgctggg
cgaggagggcgtgataattttgttggtagcattgtgaaaatccgtcttggaaacttcaag
ggatgtggtggtcgtgttgtgagccgcaatgatcaattagttcgggttgaattggagtct
cagatgaaaacggttacagttaaacgtgaggagatatctgtagacgcgggtgttttcact
tcatccagtgaagcacctcaacaaggtattggaagtcagacacccatgcatcgagcacaa
actccactgcacccatatatgactcctatgagagatcaaggcggagaaacaccagtacat
agtggtatgcggacgcctatgcgccatcaagcttggaatccttatgctatctcaacttac
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system