KEGG   Papaver somniferum (opium poppy): 113298971
Entry
113298971         CDS       T05758                                 
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A-like
  KO
K12585  exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
psom  Papaver somniferum (opium poppy)
Pathway
psom03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psom00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    113298971
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psom03019]
    113298971
Messenger RNA biogenesis [BR:psom03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     113298971
SSDB
Motif
Pfam: RNB OB_Dis3 PIN_4 Rrp44_CSD1 Rrp44_S1 CSD2 OB_RNB Toxin_R_bind_C
Other DBs
NCBI-GeneID: 113298971
NCBI-ProteinID: XP_026403664
Position
1:122156210..122162522
AA seq 940 aa
MLQSKSFNRKTKQGKIVKVVREHYLRDDIYCGASICKAESCEKQEARLNLTTPSSTLLIL
DTNVVLNQIDLLENPAMDDVVILSVVLNEVKNQNLSVYNRLRAICSNNLRRFFVFSNEHH
KDTYIKAMERESPNDRNDRAIRVATDWYQKHLGASVRVLLLTNDRENKKRATAEGIAAET
IEAYVRSLNRPDLLDLVVVRQSSEDVNMVDVEDHRPSKRKAIYTEHKPMSEITSGLHRGI
FHQGKLRVNRYNPFEAYVGSESIGDEIIIHSRSNMNRAFDGDIVAVELFPKEQWHDGKSS
SIAEDEDEEDEDVHLVPNSSDDAPRNTKVVQEAANDMSSDSSRPTGRVVGIIKRNWQSYC
GSLEPMDMPAATGGVAHALFVTKDRRFPKIRIQTRQLENLLHKRIIVAVDSWDCLSRYPS
GHYVRTIGDIGDRETESEVVLIENDIDSRPFSAQVLSCLPPIPWSVSSVDLENPNRQDLR
HLRVFSVDPPGCRDIDDALHCTPLPNGHFEVGVHIADVTNFVHPGTPLDDEATQRGTSVY
LVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEAEIISTRYTKSVIKSCAALSYV
EAQARMDDSRLMDSLTTDLRNMNALAKIMRLRRIEKGALTLASAEVKFQIDTETHDPLDI
GMYQIREANQMVEEFMLAANISVAEKILKHFPVFSLLRRHPSPTKEMLEPLLRTTAALGL
GLDVSSSKALADSLDQAVADDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFLHYGLAAA
LYTHFTSPIRRYADVIVHRLLAAALGIYKLPPIFQDRPQLTSIADNLNYRHRNAQMAGRA
SVELHTLIYFRNRPTDTEARIVKIRSNGFIVFVPKYGIEGPVYLTSKGDKGGGEWFVDEE
HQKVKKMDGSISYSVLQAVKIHMEVVEPQPNRPKLQLTLI
NT seq 2823 nt   +upstreamnt  +downstreamnt
atgttgcagagtaaatccttcaatagaaaaactaaacaaggaaaaattgttaaggttgtg
agagaacactatctaagagatgatatatattgtggagcttcaatatgtaaagctgaatca
tgtgagaaacaagaagctcgtttaaacttaacaacaccttcttcaacccttctcattctt
gatactaatgttgttctcaatcagattgatttacttgagaatcctgcaatggatgatgta
gttatactatcagttgtgcttaatgaagtgaaaaaccagaacctatctgtttacaataga
cttagggcaatttgcagcaacaacctaaggaggtttttcgtcttttcaaatgaacatcac
aaggatacatatatcaaggccatggaacgcgaaagtcctaatgaccgaaacgatagagca
atccgggtagcaactgattggtatcaaaagcatctcggtgccagtgtacgagtattacta
ctcacaaatgatagagagaacaagaaaagggcaactgcagaaggcattgcagcagaaaca
attgaagcatatgttagatcacttaatcgaccagatttactggacttagtagttgtgcgt
caatcttctgaggatgtaaacatggtagatgttgaagatcatagaccttcaaagagaaaa
gccatttatactgagcacaagccgatgtcggagattacttctggattgcatcgtggaatc
tttcaccaaggaaagcttcgagtcaatcgatataatccttttgaggcttatgttgggagt
gagagcattggtgatgagattattattcacagcaggagtaacatgaatagggcttttgat
ggtgatatagtggcagtggaactctttcctaaagaacaatggcatgatgggaaatcttcc
tctatagcagaagatgaggatgaagaggacgaagatgttcatttagttccaaacagctct
gatgatgctcctagaaacacgaaagtcgtgcaagaagctgcaaatgacatgagttccgat
tcaagccgtccaactgggcgtgttgttggaattataaagcggaactggcaatcttattgt
ggttctctggaacctatggatatgccagcagctactgggggtgtcgcacatgcgttattt
gttactaaagatcgcagatttcctaagattaggattcaaactcgacagcttgaaaatctc
ttacataagagaattatcgtggctgtagattcttgggattgtttatctcggtatccttcc
ggccattatgtacgaaccataggagatatcggtgatagagaaactgaaagtgaggttgtt
ttgattgagaatgatatagattccagaccattttctgctcaagtgttgtcttgtttgcca
cctatcccttggtcggtgtcctcggtggatctggagaatcccaacaggcaggatttgcga
cacttgcgtgtatttagcgtggatcctccaggctgcagggatattgatgatgcactacac
tgtactcctcttccaaatggacattttgaagttggagttcatattgctgatgtcacgaat
tttgttcaccctggtactcctcttgatgatgaagcaacccaaaggggtacgtcagtctat
cttgttgagcgacgcattgacatgctcccaaaacctctaacagaagatatatgttctctt
cgttccgatgttgagagactagccttctctgttatctgggaaatgacgcctgaagccgag
attatttctactagatacacaaagagtgtcatcaagtcatgtgctgcgttatcttacgtt
gaagctcaagccaggatggatgatagtcgcctgatggactcactaactacggacctgcga
aatatgaatgcattggcgaagattatgaggctcagacgtattgagaaaggagctttaact
cttgcttctgcagaagtaaaattccagattgacactgaaactcatgatcctcttgatatt
ggaatgtatcaaattcgggaggcaaatcaaatggttgaggaatttatgcttgctgctaat
atttcagttgcagaaaaaatcttgaaacattttccggtgttctcgctactaaggcgccat
ccgagtcctaccaaagagatgcttgaacctttgctgcgtactacggctgctcttggtttg
ggtttggatgtgtcatcttcaaaagccctggctgattcacttgaccaggctgtggctgat
gatccatacttcaataagcttattcgtatactggcgactagatgcatgactcaggctgtt
tacttctgtagtggggacctcacccctccagaatttctgcattacggtcttgctgcagct
ttatatactcattttacttccccgattcgaagatatgcagatgtcattgtacacagattg
cttgctgcagctttggggatttataagcttccaccaatattccaagatagacctcaactt
actagcatcgctgacaatttaaattaccggcataggaatgctcagatggcagggcgagcc
tcggtcgagttgcatacactcatatatttcaggaatcggccaacggatactgaagcaaga
atagtgaagataagatccaatggatttattgtatttgtgcccaagtatggtatagaaggc
cccgtgtacctgacgtcgaaaggggacaagggtggaggggagtggtttgtggatgaggag
catcagaaggttaaaaagatggatggcagcatcagttacagcgttctgcaggcagttaaa
attcacatggaggtcgttgaaccccagcccaatcggccgaagctccaactcactctcatc
tag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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