KEGG   Pseudomonas sp. Os17: POS17_1910
Entry
POS17_1910        CDS       T04177                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
psos  Pseudomonas sp. Os17
Pathway
psos03030  DNA replication
psos03410  Base excision repair
psos03420  Nucleotide excision repair
psos03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:psos00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    POS17_1910 (ligA)
   03410 Base excision repair
    POS17_1910 (ligA)
   03420 Nucleotide excision repair
    POS17_1910 (ligA)
   03430 Mismatch repair
    POS17_1910 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psos03032]
    POS17_1910 (ligA)
   03400 DNA repair and recombination proteins [BR:psos03400]
    POS17_1910 (ligA)
Enzymes [BR:psos01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     POS17_1910 (ligA)
DNA replication proteins [BR:psos03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     POS17_1910 (ligA)
DNA repair and recombination proteins [BR:psos03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     POS17_1910 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     POS17_1910 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     POS17_1910 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      POS17_1910 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD 5_3_exonuc PTCB-BRCT
Other DBs
NCBI-ProteinID: BAQ73604
UniProt: A0A0D6BFS5
Position
2092872..2095244
AA seq 790 aa
MTAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLYHELKALEAEHPELVTSDSPTQ
RVGSAALSAFTQVRHEIPMLSLGNAFEEVDMREFDRRVVEGLDLPAGDLFGAGAAVEYSC
EPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPATLEVRG
EVFMSKAGFERLNEAQLASGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQVSA
DIADTHIGNLQQLKQWGLPISRELRLAKGIDECLDYYREIGDRRNALAYEIDGVVFKVNS
IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
SNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVVERRPQDARPVQIPESCPVCGS
HVERTQLVKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGDKTIEQ
LVDEQLIASPADLYQLKYEQIIDLEGFAEVSSNKLLKAIEDSKRPALARFIYALGIPDVG
EETAKVLARSLGTLERVQQALPQVLTYLPDVGLEVAHEIHSFFQDSHNRQVIGALLAADQ
CGLQLQDQGELGAEFAASTTLGGMLDKLNIPSVGPGAAQKLADKFGSLQGVIDADWLDMR
QALPEKQAKAVREFFDNPANAQLARAIEDQLTAFGMHWLSEKKVVEGLPLAGKTWVLTGS
LELMSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVLDEAAFVAF
LSEHGVPLPA
NT seq 2373 nt   +upstreamnt  +downstreamnt
atgaccgccgctgaaacccgcattcttgagctgcgcgccgagctggatcaacacaactac
cgctaccacgtactggacgaaccgagcattccggacgccgagtacgaccgcctgtaccac
gagctcaaggccctggaggccgagcatccagagctggtcaccagcgattctccaacccag
cgggtcggcagtgcggcgctctcggccttcacccaggtacgccatgagatccccatgctc
agcctgggcaacgccttcgaagaagtcgacatgcgcgaattcgatcgtcgggtcgtcgag
gggctggacctgccggcgggcgacctgttcggtgctggcgccgcagtggagtacagctgc
gagcccaagctcgatggcctggcggtgagcctgttgtaccaggacggcgtgctggtgcgc
ggtgccacccgtggcgacggcaccacgggcgaagacatcagtgtcaacgtacgtaccgtg
cgcaacatcccgctcaagctgcaaggcagcggttggccggcgaccctggaagtgcggggt
gaggtcttcatgtccaaggccggcttcgagcgattgaacgaggcgcaactggcttcgggc
ggcaagaccttcgccaacccgcgcaacgccgctgcgggcagcctgcgtcagctggactcg
aagatcaccgccagtcggcccctggaattctgctgctacggtctgggccaggtcagcgcc
gacatcgccgacacccacatcggcaatctgcagcagctcaagcagtgggggttgcccatc
agccgcgagttgcgtctggccaagggcatcgacgagtgcctggattactaccgtgaaatc
ggcgaccgccgcaacgcgctggcctatgaaatcgacggcgtggtgttcaaggtcaacagc
atcgcctcccagcgcgagctgggcttccgtgcccgcgagccgcgctgggctattgcccac
aagtttccggccatggaagagctgaccgagctgctggatgtggagttccaggtcggccgc
accggtgcggttaccccggtagcccgtctgaagccggtgaaagtggcgggcgtgacggtg
tccaacgccaccttgcacaacatggatgaagtggcgcggctggggctgatgatcggcgac
acggtgatcatccgccgtgccggcgatgtgatcccgcaagtggtgcaggtggtcgtcgag
cgccgtccgcaggacgcccggccggtgcagattcccgaaagctgcccggtctgtggttca
catgtcgagcgcacccaactggtcaagcgcagcaaggggcgggaaaccgtgagcgagggc
gcggtgtatcgctgtgtcggtcgcctggcctgcggcgcccagctcaagcaggcgatcatt
cactttgtctcccgtcgcgccatggacatcgaaggcctgggggacaagaccatcgagcaa
ctggtggacgaacagctcattgcttcgcccgcggatctttaccagctcaagtacgaacag
atcatcgacctggaaggcttcgccgaagtctccagcaacaagctgctcaaggccatcgag
gacagcaagcgtccggccctggcacggttcatctatgccctgggcattcccgatgtcggc
gaggaaacggccaaggtcctggcgcgctccctgggcaccctggagcgtgtccagcaggcc
ttgccgcaggtcctgacctacctgccggatgtggggctggaggtggctcacgagatccac
agctttttccaggacagccataaccgccaggtgatcggtgccttgctggccgcggaccaa
tgtggcctgcagctgcaggatcagggcgagctcggggccgagttcgccgccagtaccacc
ctgggcggcatgctcgacaagctcaatatcccctcggtgggcccaggagccgcgcagaag
ctggcggacaagttcggctccctgcagggcgtgatcgacgcggactggctggacatgcgc
caggccttgccggagaagcaggccaaggcggtgcgcgagttcttcgacaacccggccaat
gcccaattggcccgggccattgaagaccagctcacggcgtttggcatgcactggctgagt
gagaagaaagtggtcgaaggcctgcctctggctggcaagacctgggtgctcaccggctcg
ttggagctgatgagtcgcgatgtggccaaggaaaagctggaaagcctgggggccaaggtg
gcagggtccgtgtcggcgaaaacccactgcgtggtggcaggacccggcgccggctccaag
ctggccaaggccaatgagctggggctcaaggttctggacgaagctgccttcgtggccttt
ctcagtgagcatggcgtccccctccctgcgtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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