KEGG   Pseudomonas sp. Os17: POS17_5535
Entry
POS17_5535        CDS       T04177                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
psos  Pseudomonas sp. Os17
Pathway
psos03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:psos00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    POS17_5535
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psos03021]
    POS17_5535
   03400 DNA repair and recombination proteins [BR:psos03400]
    POS17_5535
Enzymes [BR:psos01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     POS17_5535
Transcription machinery [BR:psos03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     POS17_5535
DNA repair and recombination proteins [BR:psos03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      POS17_5535
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 Biotin_lipoyl
Other DBs
NCBI-ProteinID: BAQ77229
UniProt: A0A0D6BR80
Position
complement(6163939..6168138)
AA seq 1399 aa
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVNDRDGGSVSTTRIVDTTVGRALLFQVVPKGLSFDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGEEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDVKDRPAAGKDIRPAVKM
VGMDGKDLLLPGTDVPAQYFLPANALVGVADGAQIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLSAEDKFISKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq 4200 nt   +upstreamnt  +downstreamnt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcat
cgcggcgtgatctgcgagaagtgcggcgttgaagttgcactggccaaggttcgtcgtgag
cgcatggcgcacatcgagctggcctcgccggttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgagcgcgttctctac
ttcgagagctacgttgttatcgatccaggcatgaccaccctggaaaagggtcagctgctg
aacgacgagcagtacttcgaagcgctggaagagtttggtgatgacttcgacgcccgcatg
ggtgccgaggctgtccgcgagctgctgcacgctatcgacctggagcacgagattggccgt
ctgcgtgaagagattccgcaaaccaactcggaaaccaagatcaagaagctgtccaaacgt
ctgaagttgatggaggccttccaaggctccggcaacctgccagagtggatggtgttgacc
gttctgccggttctgccgccagatctgcgtccactggttccgctggatggcggtcgcttt
gcgacttccgacctcaacgacctgtatcgtcgagtgatcaaccgtaacaaccgtttgaag
cgcctgctggatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagccgtcgacgccttgctcgacaacggtcgtcgtggccgcgctattaccggttcgaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgcgttgactattctggtcgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggctctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggcctggccacgaccattaaagctgccaagaagatg
gtcgagcgcgagctgccagaggtttgggacgttctcgctgaagtgattcgcgaacaccca
gtgcttctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgtgcggcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgttccgctgacgttggaagcccagctggaagcg
cgtgcgttgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgacccgtgaagcgatcaacgcc
aaaggcgaaggtcgtgtgttcgccgacctgcaggaagtcgaccgtgtattccgcgccggc
gaagctgctctgcacgccaagatcaaggttcgtatcaacgaaaccgtcaatgatcgcgat
ggcggcagcgtgagcaccacccgtattgtcgacactactgtcggccgtgcgctgctgttc
caggttgtgccaaaaggcctgtctttcgacgtcgtcaacttgccgatgaagaagaaagcg
atctccaagctgatcaaccagtgctaccgcgtggtgggtctgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggttttgcttactcgaccatttccggcgtttcgatcggc
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcggtgctgccaccgacgaa
gtgaaggaaatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaagtgatcgacctttggtcgaaggctaacgacgaagtatccaaggcgatgatggccaac
ctctcgaaagagaaggtcattgaccgtcacggcgaagaagtcgagcaagagtcgttcaac
tcgatgtacatgatggctgactcgggtgcgcggggttccgctgcacagatccgtcagttg
gccggtatgcgtggtctgatggccaagccggacggctccatcatcgaaacgccgattact
gcgaacttccgtgaaggtctgagcgtactccagtacttcatctcgactcacggtgctcgt
aaaggtctggcggataccgcgttgaaaactgcgaactccggttacctgactcgtcgtctg
gtagacgtggcgcaggatctggttgtaaccgagatcgattgcggcaccgagcacggtctg
ctgatgactccgcacattgaaggcggtgacgttgtagagcctctgggtgagcgcgttctg
ggtcgtgttatcgcccgtgacgtattcaagccgggtaccgaggacgtcatcgttcctgcg
ggcactctggtcgacgagaagtgggttgagttcatcgagctgaacagcatcgacgaagta
atcgtgcgttcgccgatcagctgcgaaacccgttatggcatctgcgccaagtgctacggt
cgcgacctggctcgtggtcacctggtgaacatcggtgaagcggttggcgtaatcgctgcc
cagtccatcggtgagccgggcacccagttgacgatgcgtacgttccacatcggtggtgcg
gcaagccgtacctcggcagcggacagcgtacaggtgaaaaatggcggtaccgtccgtctg
cataacctgaagcacgttgagcgggtggatggtcacctggttgccgtgtcgcgttcgggc
gagctggcaattgccgacgacttcggtcgtgagcgcgagcgctacaagctgccttacggt
gctgtgatttcggtgaaggaaggcgataaggtcgacgctggtgccatcgtggccaagtgg
gatccgcacactcacccaatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtacttgacgtcaaggaccgtccagctgccggtaaggacattcgtccagccgtgaagatg
gtgggtatggatggcaaggatctgctgctgccaggtaccgacgtaccggcccagtacttc
ctgccggctaacgcccttgtgggtgttgccgacggtgcgcagattgcgatcggtgatgtt
atcgctcgtattccgcaagaaacttcgaagacccgtgacatcaccggtggtctgccgcgt
gttgctgacttgttcgaagctcgtcgtccgaaggaagcctcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaagggcaagcgccgtctggtcatcactccgaac
gacggtagcgatccgtatgaggagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagttatttccgacggtccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgttaacgagatccaggacgtt
tatcgtctgcagggcgtgaagatcaacgataagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgagattgccgaatccggcgactccagcttcatcaagggcgaccagatg
gaactgactcacgtactggtagaaaacgagcgtctgagcgctgaagacaagttcatctcc
aagttcacccgcgtactgctgggtattactaaggcgtccttgtccactgagtcgttcatc
tcggcggcctctttccaagagaccactcgtgttctgaccgaagcggcagtgaccggcaag
cgcgactacctgcgcggcctgaaggaaaacgtggtcgtgggtcgtctgatcccggccggt
accggcctggcttaccacagtgagcgtaagcgccgtcgtgatgcagacaagccactgcgt
gtaagcgcaagcgaagtcgaagcagcactgactgaagcgctgaactccagcggtaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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