KEGG   Pelodiscus sinensis (Chinese soft-shelled turtle): 102451631
Entry
102451631         CDS       T02980                                 
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
pss  Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pss00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    102451631 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pss03400]
    102451631 (LIG4)
Enzymes [BR:pss01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102451631 (LIG4)
DNA repair and recombination proteins [BR:pss03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     102451631 (LIG4)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT DNA_ligase_IV DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme Ribosomal_S5_C DUF6190
Other DBs
NCBI-GeneID: 102451631
NCBI-ProteinID: XP_006115625
Ensembl: ENSPSIG00000001504
UniProt: K7F0E0
Position
Unknown
AA seq 912 aa
MSCPPTSQSSPRRSVASVVPFADLCSILERIQKCKSRPEKTKYFKEFLDSWRKFHDALHK
KERDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRTP
TGSHGDAGDFAMIAYFVLKPRCPKQGKLTIEQVNELLNSVAGNNAAKRKDLVKKNLLQLI
TQSSALEQKWLIRMIIKDLKLGVSQQTIFSLFHPDASELHNVTTDLEKVCRLLHDPAVSL
SDVSIMLFSAFKPMLAAIANVKQIEKQMNNQSFYIETKLDGERMQMHKDGDVYKYFSRNG
YDYTQQFGASPLEGSLTPFIHNVFKNNIQNCILDGEMMAYNPNTQTFMQKGNKFDIKRMV
DDSDLQTCFCVFDVLLVNDQKLGHEVLSKRYEILNELFTPMIGRIHIVHKTQASTRKEVV
DALNEAIDNREEGIMIKDPMSIYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGL
RGGMMSHFLCAVAETSPPGEKPSVFHSVCRVGSGYTMKELYDLGLKLAKHWKPFRKRDPP
CNILCGTEKPEVYIEPCNSVIVQIKAAEIVASDMYKTDCTLRFPRIEKIREDKEWHECMT
LDFLEQLRGKASGKLASKHLDMGDDEPQEKKRKTVPKVKKIIGIMDQFKAPDLSNVNKVS
NIFEDVEFCVMTGTQNHSKSELESKVAESGGNVVQNPGPDTYCVIAGIENVRVKNIILSN
KHDVVRAEWLLQCFETKMFVPWQPAFMIHMSPDTKQHFACEYDCYGDSYTADTDLTQIKE
VFSRINENDEKMPLDMIADLEERYLWNSSPLSMFRQNTIYLDLYAAVNDPSTKTHGTMLS
IRALELRFHGAKVVSQLKEGVSHVVMGEDRTRVKEIKALRRTFERKFKILSELWVTDSIK
EGKLQYENQYLI
NT seq 2739 nt   +upstreamnt  +downstreamnt
atgtcttgcccacctacttcacaatcttcccctaggcgaagtgtagcatcagtagttccc
tttgcagatctatgctcaattttagaacgaatacagaaatgtaaatcccggccagagaaa
accaagtattttaaggaatttttagattcatggaggaaatttcatgatgctcttcacaaa
aaagagagagatgtcacagactctttttatccagcaatgcgtcttattctcccgcaattg
gaaagagagagaatggcttatggaattaaagaaaccatgcttgctaagctgtatattgaa
ctgctcaatttacccaaagaaggaaaagatgccctaaaacttttaaattatagaacacct
actggctcacatggagatgctggagactttgcaatgattgcctattttgtattgaaacca
aggtgcccaaaacaagggaaactgacaatagaacaggtgaatgaactcttgaattcagtt
gctggtaataatgctgccaaaagaaaggacctagtaaagaaaaatcttcttcagttaata
actcagagctcagcactcgaacaaaagtggctaatcaggatgattataaaggatctaaaa
cttggtgttagccagcaaaccatattttcccttttccatcctgatgcttccgagttacac
aatgtcacaactgacctagagaaagtttgcagactacttcatgaccctgctgtgtcactc
agtgatgtttccatcatgttgttttctgcctttaaacctatgcttgctgctattgctaat
gtcaagcaaatcgagaaacaaatgaataaccagagtttctacatagaaactaaactagat
ggtgaacgtatgcagatgcataaagatggtgatgtatacaagtatttctcccgtaatggg
tatgattatactcagcagtttggtgcttctccccttgaaggttcattaactccatttatt
cataatgtgtttaaaaataatatacaaaactgcattcttgatggtgaaatgatggcctac
aatcccaatacacaaacttttatgcagaagggaaacaaatttgacataaaaagaatggta
gatgattctgatctgcagacatgtttttgtgtgtttgatgtattattggttaatgatcag
aaattgggtcatgaagtactaagcaaaagatatgagattctaaatgaactcttcacacca
atgataggcagaattcacatagtgcataaaacacaagctagcactaggaaagaagtagtt
gatgctctaaatgaagcaatagataacagagaagaaggaatcatgataaaagatcctatg
tccatttacaagccagacaagcgtggagaaggctggttaaaaatcaaacctgaatatgtc
aatggactcatggatgaactagaccttttaattgttggtggttactggggcaaaggtttg
cgtggtggcatgatgtctcactttttgtgtgctgttgctgagacttcccctcctggtgaa
aaaccatctgtatttcattctgtttgtcgtgttggttctggttacactatgaaggagctg
tatgatcttggtttgaagttggccaaacactggaaaccttttcgtaaaagagatcctcca
tgtaacattttatgtgggactgagaagcctgaagtttacattgagccttgtaactcagtc
atagttcagattaaggcagcggagattgttgctagtgatatgtacaaaactgactgcacg
ctgcgattccctcgaattgagaaaataagagaggacaaagagtggcatgaatgtatgact
ttggatttcttagaacagctcaggggtaaagcttcagggaagctagcatcaaagcacctt
gatatgggagatgatgaaccacaagaaaagaaacggaaaactgtaccgaaggtaaagaaa
ataattggaatcatggatcagtttaaagcccctgatctttccaatgtaaacaaggtttct
aatatatttgaagacgttgaattttgtgttatgactggaactcaaaaccattccaaatct
gaactggaaagtaaagtagcagaaagcggtggcaatgtggtgcaaaatcctggaccagac
acttattgtgttattgcaggaattgagaatgtcagagtaaaaaatatcatattgtccaac
aagcatgatgttgtgagagcagagtggcttttacagtgttttgaaacaaaaatgtttgta
ccatggcagcctgccttcatgattcacatgtctccagatacaaaacaacattttgcatgt
gagtatgactgttatggtgacagctacacagcagatacagatctgacccaaataaaggaa
gtattctcaagaattaatgaaaatgatgagaagatgcctttggacatgattgctgactta
gaagaacgttatttgtggaacagctctcctctcagtatgttcaggcaaaataccatttat
ctggacctttatgctgctgttaatgacccgagtaccaagacccatggaacaatgctatca
attagagctttggagctccgtttccatggagcaaaagtagtctcgcagctaaaggagggt
gtgtcccatgtagttatgggagaagatcgtacccgtgtgaaagagataaaagcacttagg
agaacatttgagagaaaatttaaaatcctatctgagctgtgggtaacagattctataaag
gaggggaagttacagtatgaaaatcaatatctaatttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (10)   
   Pfam (10)   
All databases (36)   

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