KEGG   Pseudomonas syringae pv. tomato DC3000: PSPTO_2832
Entry
PSPTO_2832        CDS       T00118                                 
Symbol
syfD
Name
(GenBank) syringafactin efflux protein SyfD
  KO
K05685  macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
Organism
pst  Pseudomonas syringae pv. tomato DC3000
Pathway
pst02010  ABC transporters
Brite
KEGG Orthology (KO) [BR:pst00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   02010 ABC transporters
    PSPTO_2832 (syfD)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:pst02000]
    PSPTO_2832 (syfD)
Transporters [BR:pst02000]
 ABC transporters, eukaryotic type
  Other subfamilies
   Macrolide exporter
    PSPTO_2832 (syfD)
SSDB
Motif
Pfam: MacB_PCD ABC_tran FtsX AAA_21 SMC_N AAA_16 AAA_29 RsgA_GTPase ABC2_membrane_3 AAA_22 MMR_HSR1 DUF4396 nSTAND1 AAA_23 AAA_25 AAA_28 TadZ_N nSTAND3 IIGP
Other DBs
NCBI-ProteinID: AAO56331
UniProt: Q881Q1
Position
3181322..3183328
AA seq 668 aa
MNQKVDIEALHETSINSDQPLLRLQQVSRSFMAGDREFQVLKHIDLAIHTGELVAIIGAS
GSGKSTLMNILGCLDHASAGSYQVNGQETRELDDDALAALRRDHFGFIFQRYHLLPHLDA
VRNVEIPAIYAGTAQTTRHERAQALLTRLGLGGHLQHRPSQMSGGQQQRVSIARALMNGG
QVILADEPTGALDTASGKEVMRTLLELHAAGHTVILVTHDPKVAANAERIIEVSDGEIIS
DRRTAQTTQPAPEAQPATPPGPAPRRLLASLGLFREAFNMAWIALISHRMRTLLTMLGII
IGITSVVSISAIGEGAKRYVLKDIQSIGSNTIDIYAGANFGDSRAKSIETLLPSDVAALN
QLYYIDSATPVVGRSMLVRYRNVDVDAQLNGVSSRYFQVRNIQLAAGITFSDQDARRQAQ
VVVLDHNTAQRLFGPGVNPLGQVILVGKLPCTVIGVTSDHKNLFIAGNTLNLWMPYETAA
GRVLGQRHLDSISVRVKDGMPSKAVEEQIKALMLQRHGTKDFFTNNLDSVMQTVQKTSRS
LTLLLSLIAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARQSDIRQQFLVEAVMVC
LMGGVIGIGLSYAIGYLFTLFVQQWEMVFSLASVVTAFACSTLIGVLFGFVPARNAARLD
PIEALARD
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgaaccagaaggtagacatcgaagcgttgcacgaaacgtcgatcaacagcgaccaaccg
ctgctgcgcctgcaacaggtcagccgcagcttcatggcaggcgaccgcgaatttcaggtc
ctcaagcacatcgacctggccattcacaccggcgaactggtggcgatcatcggtgcatcg
ggctcgggcaaatcaaccctgatgaacattctcggttgcctggaccatgccagcgccggc
agctatcaggtcaacgggcaggaaacccgcgagctggatgacgatgcgctggcagcgctg
cgccgcgaccattttggcttcattttccagcgctaccatttgttgccgcacctggatgcg
gttcgcaatgtggagattccggccatttacgccggcaccgcgcagaccacgcgccatgag
cgtgctcaggcattgctcacgcgcctgggactgggcgggcatctgcagcatcggcccagc
cagatgtccggcggtcagcagcaacgcgtgagcatcgccagagcgttgatgaacggcggg
caggtgatactggccgatgagccgaccggcgcactggataccgccagcggcaaggaagtc
atgcgcacgctgctggaactgcatgccgcgggccatactgtgattctggtaacgcacgac
cccaaggtggctgccaacgccgagcggattatcgaagtcagcgacggcgaaatcatcagt
gaccgacgcacggcgcagacaacgcagcccgcgcccgaagcgcagccagccacgccgcca
ggtcccgcgcccaggcgtctgttggccagcctggggctgttccgtgaagcgttcaatatg
gcctggatcgcgctgatatcgcaccgcatgcgcaccttgctgaccatgcttggcatcatc
atcggtatcacctcggtggtctcgatctcagccattggcgaaggcgccaagcgctatgtg
ctcaaggacatccagtccatcggaagcaacaccatcgacatctatgccggcgccaacttt
ggtgacagccgggccaaatccatcgaaacgctgcttccctcagacgttgccgcgctcaat
cagctgtattacatcgacagcgccacccccgtggtcggtcgcagcatgctggtgcgctac
cgcaacgtcgatgtggacgcacagctcaatggcgtcagcagccgctattttcaggtgcgc
aacatccagctggcagccggcatcacgttcagtgatcaggatgcccggcgtcaggctcag
gtggtggtgctcgaccacaacaccgctcaacgcctgttcgggccgggcgtcaacccgctg
gggcaggtgattctggtcggcaaactgccgtgcacggtgatcggcgtcaccagcgaccat
aaaaacctgttcatcgccggtaacacgctcaacctgtggatgccttatgaaacggcggcg
gggcgggtgctggggcagcgacatctggacagcatcagcgtgcgggtcaaggacggcatg
ccgagcaaggcggtggaagagcagatcaaggcactgatgctgcagcgtcacggcaccaag
gacttcttcaccaacaacctcgacagcgtcatgcagacggtacagaaaaccagccgctcg
ctgaccctgttgttgtcgctgattgcggttatctccctggtggtgggcggaatcggggtg
atgaacatcatgctggtgtcggtgaccgagcgcactcgcgaaatcggcatccgcatggcc
gtcggcgcgcgtcagtcggacattcgccagcaatttctggtcgaggcggtcatggtctgc
ctgatgggcggggtaatcggtatcggcctgtcctacgccatcggctatctgtttaccttg
ttcgtccagcagtgggaaatggtcttttcactggcctcggtggtgaccgcattcgcctgt
tcgaccttgatcggcgtgctgttcggctttgtgcctgcacgcaatgccgcccgtctggac
cctatcgaagcgctggcgcgggactga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (19)   
   Pfam (19)   
All databases (28)   

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