KEGG   Pseudomonas syringae pv. tomato DC3000: PSPTO_3826
Entry
PSPTO_3826        CDS       T00118                                 
Symbol
holB
Name
(GenBank) DNA polymerase III, delta prime subunit
  KO
K02341  DNA polymerase III subunit delta' [EC:2.7.7.7]
Organism
pst  Pseudomonas syringae pv. tomato DC3000
Pathway
pst03030  DNA replication
pst03430  Mismatch repair
pst03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pst00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PSPTO_3826 (holB)
   03430 Mismatch repair
    PSPTO_3826 (holB)
   03440 Homologous recombination
    PSPTO_3826 (holB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pst03032]
    PSPTO_3826 (holB)
   03400 DNA repair and recombination proteins [BR:pst03400]
    PSPTO_3826 (holB)
Enzymes [BR:pst01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PSPTO_3826 (holB)
DNA replication proteins [BR:pst03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     PSPTO_3826 (holB)
DNA repair and recombination proteins [BR:pst03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     PSPTO_3826 (holB)
SSDB
Motif
Pfam: DNA_pol3_delta2 DNApol3-delta_C AAA_16 AAA nSTAND3 Mg_chelatase AAA_5 NACHT AAA_22
Other DBs
NCBI-ProteinID: AAO57294
UniProt: Q87YH2
Position
complement(4334243..4335229)
AA seq 328 aa
MAEAYPWQESLWQQMAGRAQHAHAYLLHGPAGIGKRALAERLMASLLCRAPEGLEACGHC
KSCLLLVAGSHPDNYVLEPEEADKPIKVDQVRDLVSFVVQTAQMGGRKVVLVEPVEAMNV
NAANALLKSLEEPSGNTVLLLVSHQPSRLLPTVKSRCVQQACPLPGEQMSLDWLSGALPD
CTAEERFELLTLAAGSPLLAVSLHAQGVREQRALVVEGVKKLLKQQQSATQLAEGWKDIP
LLLLFDWFCDWSHLILRYQMTQDEEGLGLGDMRKVVQYLAQKSTRGKVLDIQDWVLAQRQ
KVMSKANLNRVLLLEALLVQWAGLPGQA
NT seq 987 nt   +upstreamnt  +downstreamnt
gtggctgaggcctacccctggcaggaatcactctggcagcagatggccggtcgtgcgcag
cacgctcacgcttatctgttgcatggcccggcaggtatcggcaagcgggcattggccgag
cgcctgatggccagcttgctgtgcagggcacccgaagggcttgaggcctgtgggcactgc
aagtcctgcctgttgctggtggccggcagccatccggacaattacgtgctggagcccgaa
gaggccgataagccgatcaaggtcgatcaggtgcgtgatctggtcagctttgtcgtacag
accgcacagatgggcgggcgcaaggtggtgctcgtcgaaccggtggaggcgatgaacgtc
aatgccgccaacgccctgttgaaaagcctcgaagagccgtcgggcaataccgtcctgctg
ctggtcagccatcagccaagccgcttgttgccaaccgtcaaaagtcgctgtgtgcagcaa
gcctgcccactgccaggcgagcagatgagtctggactggctgagcggcgccttgcctgat
tgtacagccgaagaacgcttcgaactgctgacactggccgccggctcgccgctgttggcg
gtgtcgcttcacgcccaaggcgttcgcgaacagcgtgcgctggtagtggagggggtcaag
aagctgctcaagcagcaacaatcggccactcagttggctgaaggctggaaagacattccg
ctgttgctgctgtttgactggttctgtgactggtcgcatttgatcctgcgctatcagatg
acgcaggatgaagagggccttggtctgggtgacatgcgcaaggttgtgcaataccttgcg
cagaagtcgacgcgcggcaaggtgctggatattcaggactgggtgttggcgcaacgacag
aaagtcatgtccaaggccaaccttaaccgggtattgctgctcgaagcattgctggtgcag
tgggcagggttgccgggacaggcgtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (22)   

Download RDF
DBGET integrated database retrieval system