KEGG T00118: PSPTO

Pseudomonas syringae pv. tomato DC3000: PSPTO_5436

Entry

PSPTO_5436 CDS T00118

Definition

(RefSeq) Rhs element Vgr protein

K11904

type VI secretion system secreted protein VgrG

Organism

pst Pseudomonas syringae pv. tomato DC3000

Pathway

pst03070

Bacterial secretion system

Brite

KEGG Orthology (KO) [BR:pst00001]
09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    PSPTO_5436
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pst02044]
    PSPTO_5436
Secretion system [BR:pst02044]
Type VI secretion system
  Imp/Vas secretion system core components
   PSPTO_5436

SSDB

Motif

Pfam:

Phage_GPD DUF2345 Phage_base_V

Other DBs

NCBI-GeneID:

1187123

NCBI-ProteinID:

NP_795163

UniProt:

Q87U72

Position

6181756..6183798

AA seq 680 aa
MFAPANQTHFSLTIEGLSNDLQVLALQGREAISQPFAFEVDLVSEQPSLDLETLLHKPAF
LQLSPDGSGIHGQIYRASQGDSGKRLTRYAVTLRPQLAYLAHRTNQRIFQNLTVPKIIGI
VLEEHGIQGNAYEFKVGSIYPERIYCVQYDESDLHFVQRLCEEEGIHYHFQHSTNGHTLV
FGDDQTVFPKLAPVAYQQDSGMVATDPVVKRFDLRMETRTSRTTRRDYDFEKPRLTLESE
NRGDAIPDLEDYDYPGRFVDRERGKQLAKRALERHRSDYQLAVGKSDQPLLVSGHFLALT
QHPKAKWNDLWLLTEILHEGKQPQVLEESVTSDTTDLKDDFHQGYRNRFQATPWDVPNRP
PLTHPKPRILGSQSAVVTGPKGEEIHCDQYGRVKVQFPWDREGQSDDKTSCWLRVSSAWA
GAMYGGIAIPRIGMEVLVTFLEGDPDQPLISGCLYHKENVVPYDLPANKTRSTFKSMSSP
GGGGFNELRIEDKKGQEQIFLHAQRDWDENVENDQKIRVGNERHDTVEQNSHSEFKAEEH
HTVYADRKVEARADDHLTVGANQHVKVGTGQFIEAGQEIHLSSGVKVVLEAGSELTLKAG
GSFIKIDASGVTLSGPFIHVNDGGSPGNGTPAAPLMPGPLLQADADKAGAALTPAQINTL
KRNAPFCEECEKCKDGACAI

NT seq 2043 nt +upstreamnt +downstreamnt
atgttcgcgccggccaatcagactcacttttccctgaccatagaaggtctttccaatgat
ctgcaggttcttgccttgcaaggtcgggaagccatcagccagccttttgcgtttgaggtc
gatctggtcagtgagcagccatccctggacctcgaaacgctgctacataaaccggccttt
ctgcagctctcgcctgacggcagcggcattcatggccagatttaccgcgcctcacagggc
gactcgggcaagcggctaacccgctacgccgtgaccttacgcccgcaactggcctacctt
gcccaccgtaccaaccagcgtatcttccagaacctcaccgtcccgaaaatcatcggtatt
gttctcgaagagcacggcattcaaggcaacgcctacgaattcaaagtcgggtcgatttat
cctgaacgcatctactgcgttcaatacgatgaatcggatctgcacttcgtccaacggctg
tgcgaggaagaaggtatccactaccatttccagcacagcaccaacggccacacactggtg
ttcggcgatgaccagacggtgttcccgaaacttgcaccagtggcctaccagcaagactca
ggcatggtcgccaccgatccggtggtaaagcgattcgacctgcgcatggaaacccgcact
agccgcacgacacgccgcgactacgacttcgagaaaccgcgcctgacgctggaaagcgaa
aaccggggcgatgccatccccgaccttgaagactacgactaccctggccgcttcgtggat
cgcgaacgcggcaagcaactggccaaaagagcactggaacgtcatcgcagcgactaccaa
ctggccgtaggcaagagcgatcagccgctgctggtcagcggccactttctggcgctgacc
cagcaccccaaagccaaatggaacgatctgtggctgctgaccgaaatcctgcacgaaggc
aaacagccgcaggtgctggaggagtcggtcaccagcgacacaaccgacctgaaggatgat
ttccatcagggctaccgcaaccgcttccaggccaccccgtgggacgtgcccaaccgtccg
ccgctgacccaccccaaaccgcgcattctcggcagccaaagtgccgtggtcaccggcccc
aaaggcgaagaaatccactgcgatcagtacggccgcgtcaaagtgcagttcccctgggac
cgcgaaggccagtccgacgacaagaccagctgctggctgagggtctcctcggcctgggca
ggtgcgatgtacggcggcatcgccattccgcgcatcggcatggaagtgctggtgactttc
cttgaaggcgaccccgatcagccgctgatcagtggctgcctgtaccacaaggaaaacgtg
gttccgtacgacctgccggctaacaaaacccgcagcactttcaagtccatgagttcaccc
ggtggcggcggcttcaacgagctgcgtatcgaagacaagaaaggccaggaacagatattc
ctgcacgcccagcgcgactgggacgagaacgtcgagaacgatcagaagatacgcgtcggc
aacgaacgacacgacacagtcgagcagaacagccacagcgaattcaaggccgaagagcac
cataccgtctacgccgaccgcaaagtcgaagcacgggctgacgatcacctcaccgtaggt
gcgaaccagcacgtcaaggtcggcaccggtcagttcatcgaagcaggccaagagatccac
ctgagcagcggcgtgaaagtggtgcttgaagccggtagcgaattgacccttaaggctggg
ggcagcttcatcaagatcgacgccagcggcgtgaccctgagcggcccgttcatccacgtc
aacgacggcggtagccccggcaacggcaccccggcagccccgctgatgccgggtcctttg
ctgcaggccgatgccgacaaggccggtgcggctctaaccccggcgcagatcaacaccctc
aaacgcaacgcgccgttctgtgaagaatgcgagaagtgcaaggacggtgcgtgtgcgatc
tga

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

Download RDF

DBGET integrated database retrieval system