KEGG   Pedobacter steynii: BFS30_00645
Entry
BFS30_00645       CDS       T04469                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
psty  Pedobacter steynii
Pathway
psty03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psty00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BFS30_00645
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psty03019]
    BFS30_00645
   03016 Transfer RNA biogenesis [BR:psty03016]
    BFS30_00645
Enzymes [BR:psty01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     BFS30_00645
Messenger RNA biogenesis [BR:psty03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BFS30_00645
Transfer RNA biogenesis [BR:psty03016]
 Prokaryotic type
  tRNA degradation factors
   BFS30_00645
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3 RNase_II_C_S1 DbpA
Other DBs
NCBI-ProteinID: AOM75808
UniProt: A0A1D7QAT7
Position
153716..155845
AA seq 709 aa
MAKNKSSHLELVLIQLISDVLEKSNKEALNYKQVSAKLNITDAASKETILDILKQQTRKG
VFAEPERGKFRLKDLKVYLTGKVDMTADGSAFIIPDDEFEKDVFVSSRKLHNALHGDKVK
VYIYAKKSGRKNEGEVVEIIERAKTDFIGVIKISDRFAFVNIDDRKMMQDIFVPLSDLNG
AKNGQKVQVSITDWPDGAKNPIGKIITILGEQGENNTEMNAILAQYGFPLSFPPEVEKEA
NAIPEQVTEAEIAGRKDFRNTVTFTIDPADAKDFDDAISFKKLENGNYEIGVHIADVSHY
VKPNSPLDKEAYGRATSVYLVDRVIPMLPERLSNGVCSLRPHEDKLCFAAVFELDDKANI
ITEWFGRTVIHSNRRFSYEEAQEVIETKEGDHAEEILKLNELAYILRDRKFKNGAISFES
TEVKFKLDETGKPIGVFVKERKDAHKLIEDYMLLANKKVAEFIAKKGKGKQKYTFIYRSH
DSPNLENLGNFALFAARFGYKINMKSDKDIAKSLNYLMEDVEGKKEQNVLTQLAIRSMAK
AVYTTKKTSHYGLAFDHYTHFTSPIRRYPDVMVHRLLASYLNNEKSANAEEYEVAASHSS
SMEKRAADAERASIKYKQAEYLEENIGNTFLGIISGVTEWGMYVELVENKCEGMIRLRDL
SDDFYVLDEKNYCIIGQRKKKTYQLGDEVQVKVKKVDLSKRQIDFSLIQ
NT seq 2130 nt   +upstreamnt  +downstreamnt
atggcaaaaaataaatcatctcatttagaactcgttttaatacaattaattagcgatgtt
ctggagaaaagcaataaagaggctttaaattacaaacaagtctctgcaaaattaaacatt
acggatgccgcttcaaaagaaaccatcctggacatattaaaacaacagacacgtaaagga
gtatttgcagagcctgaaagaggaaagttccgcttaaaagacctgaaggtttaccttaca
ggtaaagtagacatgactgctgatggttcagcattcatcattcccgacgatgagttcgag
aaagacgtttttgtttcttccagaaagctgcacaatgccctgcatggtgataaggtaaaa
gtttacatctacgctaagaaaagcggacgtaaaaatgaaggtgaagtcgtggagattatt
gaacgcgcgaagaccgactttatcggggtcatcaagatttccgaccgtttcgcttttgtc
aacattgacgaccgcaaaatgatgcaggacatctttgttcctttgagcgaccttaacggt
gctaaaaacggacaaaaagtacaggtcagcattaccgactggccggatggggctaaaaac
ccgatcggtaaaatcattacgatccttggtgagcagggggaaaataataccgaaatgaat
gccatccttgcgcaatatggatttccgctcagcttcccaccagaagtagaaaaagaagcc
aatgcgattcctgaacaggtaacggaagcagaaattgccggccgtaaggatttcaggaat
acggtgacctttaccattgaccctgctgatgcaaaagattttgatgatgccatttccttt
aaaaagctggaaaacggcaattatgaaataggtgtgcacatcgctgatgtttctcactat
gtgaaacccaactctcccctggataaagaagcttatggaagggcaacctcagtctacctg
gtagaccgggtaattccaatgcttcctgagcgtttaagtaatggcgtatgctctcttcgt
ccgcatgaagacaaactttgctttgctgcagttttcgaactggatgataaagcaaatatc
attaccgagtggtttggaagaacggtcatccattctaacagacgtttcagttatgaagaa
gcccaggaggttatcgaaacaaaagaaggcgatcacgcggaagagatccttaaactgaat
gagcttgcttacatcctgagagaccgtaaatttaaaaatggagcgatcagttttgaaagt
acagaagtaaaattcaagcttgatgagacgggaaaacctattggtgttttcgtaaaagaa
cgtaaagatgcccataaactgattgaagattacatgctgctggccaataaaaaggttgca
gagtttatcgccaagaaaggaaaaggcaaacagaaatatacatttatctaccgttcacac
gactctccaaatctggaaaacctgggtaatttcgccctgtttgccgctcgcttcggatat
aagatcaacatgaaatctgataaagacatcgcaaaatcgcttaattatctgatggaagat
gttgaaggcaagaaagaacagaatgtgctcacgcaactggccatccgttctatggcaaaa
gccgtttataccactaaaaagaccagccattatggattggcatttgaccattatacccac
tttacctcgcctatccgccgttaccctgatgtgatggtacaccgtctccttgcctcctat
ctgaacaatgaaaagtcggccaacgcagaagagtatgaggtagcagcatctcattcttct
tctatggaaaaacgtgctgcagatgcggaacgtgcatccatcaaatacaaacaggcggaa
tatctggaagaaaatattggcaatacttttctcgggattatttcaggagttacggaatgg
ggaatgtatgtcgaactggtagagaacaagtgcgaaggtatgattcgcctgagggattta
tcagacgatttctatgtacttgacgaaaagaattactgcatcatcggacagcgcaagaaa
aaaacctaccagctgggtgatgaagtacaggtaaaagtcaaaaaagtagacctttcaaaa
agacaaatagatttttctttaatacaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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