KEGG   Pedobacter steynii: BFS30_01085
Entry
BFS30_01085       CDS       T04469                                 
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
psty  Pedobacter steynii
Pathway
psty02020  Two-component system
psty02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:psty00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BFS30_01085
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    BFS30_01085
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psty03021]
    BFS30_01085
Transcription machinery [BR:psty03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BFS30_01085
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID DUF1474 MarR HTH_IclR
Other DBs
NCBI-ProteinID: AOM75886
UniProt: A0A1D7QB15
Position
244753..246222
AA seq 489 aa
MLKQHLQQKLLQKLSPQQIQFIKLLQVPTVALDTRIKEELEENPALEDPSLMIADEPKGE
YDDLNDTPDDFDAGAKEENTDEFNVDDYLQDDTQNDYSTSYNNDDDEEKKETPIAIESTF
FESLQEQLDLVPLSDQDFIIGKQIIGSLDDDGYLRRPVTSMIDDLAFSQNAMVEEEDVLE
MLKVIQSFDPPGIAARDLQECLTLQLKRKDPANPIIQKAIVIVENYLDEFTRKHYDKLEK
SLGLNSDDLKEIIAEILRLNPKPGDSNQVTTKQLQVIPDFHVSNNDGTLILTLNSKNAPE
LRVSRSYIDMFDHYDKAAQKDKKLKEAVQFVKQKLDSAKWFIDAIKQRQQTLLKTMNAIM
QYQYEYLLTGDERKMRPMILKDIADKIDMDISTVSRVANSKYVQTEFGTFLLKSFFSEAI
QTESGEEVSNKEVKKILEDCIGNEDKRKPLADEKLTEILKEQGYNIARRTVAKYREQMNI
PVARLRKEL
NT seq 1470 nt   +upstreamnt  +downstreamnt
atgcttaaacaacatctacaacaaaaactacttcagaagctttctccacagcaaattcaa
tttataaaattgctgcaagtacctacagttgcattagatacccgtataaaagaagaatta
gaagaaaatccggcacttgaagatcccagcctgatgatcgctgatgaaccaaaaggagaa
tatgatgatctgaatgatactccggatgattttgatgctggtgctaaggaagagaataca
gatgagtttaatgtagatgattatttacaggacgatacgcaaaatgattacagtacctcc
tataataatgatgatgacgaagaaaagaaagaaactccgattgctattgagagtaccttt
tttgagagcttacaggaacaactggatttagttccattgtctgatcaggatttcatcatc
ggaaagcagattatcggaagtttagatgatgatggctacctgcggagaccggttacctcc
atgatcgatgaccttgccttctcccaaaatgcgatggttgaagaagaggatgtgctggaa
atgcttaaagtgatccaaagttttgatcctccgggaattgcggcaagggaccttcaggaa
tgcctgacactccagctaaaacgcaaagatcctgcaaatccgatcatacagaaagccatt
gtgatcgtagaaaattacctggatgaatttaccagaaaacactacgataaactggaaaaa
tcattgggactgaacagtgatgacctcaaagaaattattgcggaaatactcaggttaaac
ccaaaaccgggagattccaatcaggtgaccaccaaacaattgcaggtcatccctgatttt
catgtttccaacaatgacggaacattaattctgacactcaattcaaaaaacgctcctgaa
ctccgggtcagccgttcttatatcgatatgtttgaccactatgataaagctgcccagaaa
gataaaaaactaaaagaagcagtacagtttgtcaaacaaaaactcgattctgcaaaatgg
tttattgacgccatcaagcaaagacagcaaaccttattaaagaccatgaatgccatcatg
caataccagtatgaatacctgcttactggtgatgagcgtaaaatgcgccccatgatctta
aaagatattgcagataaaattgatatggatatctctaccgtttccagggtagcgaactct
aaatatgtgcagacagaatttggaacgttcctgttgaaatcgttcttctctgaagccatt
caaaccgaaagtggtgaagaagtatccaataaagaggttaagaaaattctggaagactgt
atcggcaacgaagataaacgtaagccgctggcagatgaaaaactaacagaaatcctcaaa
gagcaaggttacaatatcgccagaagaacagttgcaaaatacagggagcagatgaacatt
cctgttgcacgcttaagaaaagaattatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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