KEGG   Pseudoxanthomonas suwonensis 11-1: Psesu_1711
Entry
Psesu_1711        CDS       T01403                                 
Name
(GenBank) ribonuclease, Rne/Rng family
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
psu  Pseudoxanthomonas suwonensis 11-1
Pathway
psu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Psesu_1711
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psu03019]
    Psesu_1711
   03009 Ribosome biogenesis [BR:psu03009]
    Psesu_1711
Enzymes [BR:psu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Psesu_1711
Messenger RNA biogenesis [BR:psu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Psesu_1711
Ribosome biogenesis [BR:psu03009]
 Prokaryotic type
  rRNA processing factors
   Psesu_1711
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: ADV27553
UniProt: E6WTQ4
Position
1887911..1891180
AA seq 1089 aa
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GAERHGFLPLKEISRDYFQAGVDPNKAGIRELLREGQEVVVQVDKDERGNKGAALTTFIS
LAGRYMVLMPNSPTPGGVSRRIEGEDRAELKRAMDALNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLAAWRAVAEAALSKPAPFLIYQESRLIIRALRDYLRADIGEILVDTEEMYNDAR
QFMEQVMPQSLRKLKHYTDDIPLFNRFQIESQIENAYERTVRLPSGGALVIDQTEALTAI
DVNSARATKGGDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMSSSKHQRAVEDR
LQNALKYDRARVQIGRISRFGLLEMSRQRLRASLGESSQIVCPRCEGHGRMRSIESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANFLLNEKRGALREIEQRHDAPIIIVADEQLQTPH
YEVTRLRENELGEESNRPSYQRGTPRKLPVHALTKAQLNIPPPPAVTRVAPPRPAPVREE
REETPVQPAPAPVAAPAPSTGGGVVGFLKRLFGAADPAPAPARPERTQAAPQGEGRGNRG
ERPRRERGEQGGNGQQGQGRGKQRGQQARGGNAQGGQQQPQGPKQERQEKQDKQGRNPQQ
QPAGNKQQSQKQDKAPRPPKQQPAEGSTEASARPAQQPQRQRSEEQPAQPVARPAAPADT
EATLTTAAAVAVPTAVAALDSPAMQPQAEAGDASEATAVADAAAGTEEAANAESGSRRRR
GRRGGRRRRRGASAEGSNAEGAQDPGEDAESDDDNEAGNEASAEATSPAPRADQPEFDFD
DLPAPVTPAPVAETPAAAEPATPVEANVVENSHADAKPVETAAPVEAATAAEAAVVEAAE
PAPAQAEPPAASVETAAVAATPGPTPAAAPVATVEAVVEEVASAPAAPAEAAAQAAAPEA
EAAPVETTPADAAAVASATAGEPVVETQAADVGAPAAAASEPAADAEAPSADEPAQTAAP
ANPGPFTTAGLFDQLPEAGAQPAAPEAAEAVEEPKAEPAEAADAGEASEPTPTGQPAEED
QADVPRRQD
NT seq 3270 nt   +upstreamnt  +downstreamnt
atgaagcgaatgctgatcaacgccacgcaggcagaggaactgcgcgtggccatcgtcgac
ggccagaccctgtacgacatcgacatcgaacagccgtcgaaggaacagaagaagtccaac
atctacaagggccgcatcacccgcctcgagccctcgctcgaggccgccttcgtggagtac
ggtgccgagcgccacggcttcctgccgctgaaggaaatctcccgcgactacttccaggcc
ggcgtcgacccgaacaaggccggcatccgcgagctgctgcgcgagggccaggaggtcgtc
gtccaggtcgacaaggacgagcgtggcaacaagggcgccgccctgaccaccttcatctcc
ctggccggccgctacatggtgctgatgcccaactccccgacccccggcggcgtctcgcgc
cggatcgagggcgaggaccgggccgagctcaagcgcgccatggacgccctgaacatcccg
gacgacatgggcgtgatcatccgcaccgccggcgtgggccgcgacgcggaggagctgcag
tgggacctggactacctgctggccgcctggcgcgccgtcgccgaggccgcgctgagcaag
ccggccccgttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgtgactac
ctgcgcgccgacatcggcgagatcctggtcgacaccgaggagatgtacaacgacgcgcgg
cagttcatggaacaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgac
atcccgctgttcaaccgcttccagatcgagtcgcagatcgagaacgcctacgagcgcacc
gtgcgcctgccctcaggcggcgccctggtgatcgaccagaccgaggccctgaccgcgatc
gacgtcaactcggcgcgcgccaccaagggcggcgacatcgaggagaccgcgttccagacc
aacctggaggcggccgaggaagtggcccgccagctgcgcctgcgcgacctgggcggcctg
gtggtgatcgacttcatcgacatgtcctcgtccaagcaccagcgcgccgtcgaggaccgc
ctgcagaacgcgctcaagtacgaccgcgcgcgcgtccagatcggccgcatcagccgcttc
ggcctgctggagatgagccgccagcgcctgcgcgccagcctcggcgagtccagccagatc
gtgtgcccgcgctgcgaaggccacggccgcatgcgcagcatcgagtcgctgtcgctgtcc
atcatccgcgtcgccgaggagcacgcgatgaaggagaacaccgggcaggtgctggtccag
gccccggtggagatcgccaacttcctgctcaacgagaagcgcggtgcgctgcgcgagatc
gagcagcgccacgacgcgccgatcatcatcgtcgccgacgagcagctgcagaccccgcac
tacgaggtcacccgcctgcgcgagaacgagctgggcgaggagagcaacaggccgagctac
cagcgcggcaccccgcgcaagctgccggtgcacgccctgaccaaggcccagctcaacatc
ccgccgccgccggcggtcacccgcgtggccccgccgcgcccggccccggtccgcgaggag
cgcgaggagaccccggtgcagccggcgcccgcgccggtcgccgcccccgccccgtccacc
ggcggcggcgtggtcggcttcctcaagcgcctgttcggcgcagccgatccggccccggcg
cctgcgcgtccggaacgcacccaggccgccccgcagggcgaaggccgcggcaaccgcggc
gagcgtccgcgccgtgagcgtggcgagcagggcggcaacggccagcagggccagggccgt
ggcaagcagcgtggccagcaggcccggggcggcaacgcccagggtggccagcagcagccg
cagggcccgaagcaggagcgccaggaaaagcaggacaagcaggggcgcaatccgcagcag
cagcctgccggcaacaagcagcagtcgcagaagcaggacaaggctccgcgtccgccgaag
cagcagcccgccgagggcagcaccgaggcgagcgcccgtcccgcgcagcagccgcagcgc
cagcgcagcgaggagcagccggcccagccggtcgcacgtcccgccgccccggccgatacc
gaggccacgctgaccacggccgccgccgtggccgtgccgactgcggtcgccgcgctcgac
agcccggccatgcagccgcaggccgaggccggtgacgccagcgaggcgaccgccgtggcc
gatgccgccgcgggcaccgaggaagccgcgaacgcggagagcggcagccgccgtcgccgt
ggccgtcgtggcggccgtcgccgtcgtcgtggtgcttcggccgaaggcagcaacgccgag
ggcgcccaggacccgggcgaggacgccgagagcgatgacgacaacgaggccggcaacgaa
gccagcgccgaggcaaccagccccgcgccgcgcgccgaccagccggagttcgacttcgac
gacctgccggcgccggtgacgcctgccccggttgccgagacccctgccgccgccgagccg
gccaccccggtcgaggcgaatgtggtcgagaacagccacgcggacgccaaaccggtcgaa
accgccgccccggtcgaggccgccaccgcggccgaagccgctgtcgtggaagctgccgaa
ccggccccggcgcaggccgaacctccggctgccagcgtcgagaccgctgccgtcgccgcg
accccgggtccgaccccggccgccgcgccggtggccacggtcgaggcggtggtcgaggaa
gtcgcttccgctccggcagccccggccgaggctgcggcccaggccgctgctccggaagcc
gaagctgcaccggtcgaaaccactccggccgatgccgccgcggttgcctccgcgaccgcc
ggcgagccggtggtcgagacccaggctgccgacgtcggagccccggccgccgcggcgagc
gaaccggccgcggacgccgaagctccgtccgccgacgagccggcccagaccgcggccccg
gccaacccgggccccttcaccaccgccggcctgttcgaccagctgccggaggctggggcg
cagccggccgcgccggaagctgccgaagccgtggaagagcccaaggccgagccggctgaa
gccgccgacgccggagaagccagcgagccgaccccgaccgggcagccggccgaagaggac
caggcggacgtcccgcgtcgccaggactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (48)   
   KEGG ORTHOLOGY (1)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (59)   

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