KEGG   Pelolinea submarina: Pelsub_P1677
Entry
Pelsub_P1677      CDS       T05783                                 
Name
(GenBank) DNA ligase (NAD+)
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
psub  Pelolinea submarina
Pathway
psub03030  DNA replication
psub03410  Base excision repair
psub03420  Nucleotide excision repair
psub03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:psub00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Pelsub_P1677
   03410 Base excision repair
    Pelsub_P1677
   03420 Nucleotide excision repair
    Pelsub_P1677
   03430 Mismatch repair
    Pelsub_P1677
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psub03032]
    Pelsub_P1677
   03400 DNA repair and recombination proteins [BR:psub03400]
    Pelsub_P1677
Enzymes [BR:psub01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Pelsub_P1677
DNA replication proteins [BR:psub03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Pelsub_P1677
DNA repair and recombination proteins [BR:psub03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Pelsub_P1677
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Pelsub_P1677
   MMR (mismatch excision repair)
    DNA ligase
     Pelsub_P1677
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Pelsub_P1677
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT BRCT_2 AphA_like RUBY_RBDX
Other DBs
NCBI-ProteinID: BBB48449
Position
1971421..1973475
AA seq 684 aa
MNKAKIAIIQSMDENYTFPDYEQLKKDIHYHNYRYHVMDDPVISDYEFDQLLLSLRAIEA
LHPDWITPDSPTQRSGAPPAERFEKVRHPAPILSLANAFSEDDIRTWYERIAKIDERVRQ
SSFVLEPKIDGLTVVLHYHNGVFVQGATRGDGEVGEDITANLRTILSIPLKIPVEAGDVE
VPEVLVVRAEAFIMLKDFERLNQELAEKGEKIYQNPRNTAAGSLRQLDSALVAQRPLTIL
SYAIVINNPRDSQWETLEYLKRLGFPVSDYSQRCENLEEMIACTRGWLEKREKIPFDIDG
VVIKLDDLRLADELGFVGKDPRGSIALKFPAQEVTTKLNDIGVNVGRTGVLTPYAILEPV
EIGGVTVKQATLHNFDYIEEKDIRVGDRVLVKRAGEVIPYIIGPITDARNGDEKPYEMPK
ECPVCHQPVENIEGEVAWYCINSSCPAQIIRNIEHYVSRGAMDIVGLGIKIVEQLVDAGL
VNDVADLYMLKRDALLALEGFKDKKADNLLEAIEASKTQTLGRLITALGIRGIGEIAAED
LGRRFDDLDALAQAGTSDLEAIEGFGPNMAKAITDWFSIQKNQETVRKLKAAGVWPVRSE
AEQTAPQTLAGKKFVVTGSLVDFTREDIKVYISQHGGKVSDSVSKQTDYLVVGENAGSKL
DKARDLGVTILTEAQLKSLAEREE
NT seq 2055 nt   +upstreamnt  +downstreamnt
ttgaataaagcaaagattgctataattcaaagcatggatgaaaattacacatttcccgat
tatgaacagcttaagaaggatatccattatcacaattaccgctatcacgtgatggatgat
ccggtcatcagtgattatgaattcgatcagttattgctcagtctgcgtgccatagaagcg
cttcatccggactggattacaccggattcacccacacaacgcagcggggcaccaccggct
gaacgttttgagaaagtgcgccatccggcgcccatcctgagcctggcgaacgccttttcc
gaagacgacatccgtacctggtatgagcgtatagccaaaatagacgaacgcgtacgccag
agcagctttgtgctggaacccaaaatcgacggcctgacagtggtgctgcattaccataat
ggcgtgttcgtacaaggcgcaacacgcggggacggggaagtgggcgaggatatcactgcc
aatctacgcaccatcctgtccatcccgctcaaaatacctgtggaagctggtgatgttgaa
gtaccggaagtactggtcgtgcgcgctgaagcattcatcatgctgaaggatttcgaacgc
ttgaatcaggaactggccgaaaaaggcgaaaagatttatcagaatccgcggaacactgcg
gccggttctttgcggcagttggattcggcgctggtggcccaacgtccgctgaccattctc
agctatgccatcgtgattaacaaccccagggactcgcagtgggagacgctggagtatttg
aaacgtttgggctttccggtttcggattattcgcagcgctgtgaaaatctggaggaaatg
atagcctgcacccgaggctggctggagaaacgcgagaaaattcccttcgatatcgatggg
gtggtgatcaagctggatgacctgcgtttggcggatgaactgggctttgtaggtaaagac
ccgcgaggatccattgcgctgaagtttccggctcaggaagtgactaccaaactaaacgat
atcggagtaaacgtgggccgcaccggcgtgctgaccccttatgccatcctcgaaccggtg
gaaatcggcggtgtaacagtcaaacaggctacgctgcataattttgattatattgaggag
aaggatattcgcgtgggcgatcgcgtactggtcaaacgggccggggaagtgattccctac
atcatcggaccaatcacagatgcgcgcaacggggatgagaagccttacgaaatgccgaaa
gaatgcccggtttgccatcaaccggttgagaacattgagggcgaggtggcctggtattgc
atcaacagctcctgcccggcgcagattattcgcaacatagagcattacgtctcgcgcgga
gctatggacattgtcggattgggtatcaagattgtggaacagctggtcgatgccggattg
gtcaacgatgtggccgacctgtacatgctgaaacgcgatgcgttgttggcgctggaagga
ttcaaagacaagaaagccgataatctactggaagccattgaggcttccaaaacgcagaca
ctgggacggctgatcacagccctgggtatccgcggcatcggtgagatcgcggctgaggat
ttgggacggcgcttcgacgatttagatgctttggcgcaagccggtacatcagacttggaa
gccatcgaaggttttggaccaaacatggctaaggctattacagattggttttctattcag
aaaaaccaggaaacggtccgtaagttgaaagcggccggagtatggccggtgcgcagtgag
gctgagcagaccgcgccgcagactttggccggtaagaaattcgtggtgaccggcagcctg
gtggatttcacacgcgaggatataaaggtttatatcagccagcacggcggtaaagtatcc
gacagcgtcagcaaacagaccgattacctcgtggtgggtgagaacgccggctccaaattg
gacaaagcgcgagacctgggagtcaccatccttacagaagcccaacttaaaagcctggca
gaaagagaagaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (10)   
   Pfam (10)   
All databases (28)   

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