KEGG   Pseudomonas sp. VLB120: PVLB_07255
Entry
PVLB_07255        CDS       T02897                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
psv  Pseudomonas sp. VLB120
Pathway
psv03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:psv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    PVLB_07255
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psv03400]
    PVLB_07255
DNA repair and recombination proteins [BR:psv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PVLB_07255
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      PVLB_07255
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 AAA_22 HAMP FlaG Viral_helicase1
Other DBs
NCBI-ProteinID: AGZ34252
UniProt: A0AA86AB11
Position
1624479..1626494
AA seq 671 aa
MSEFQLVTRFQPAGDQPEAIRQMVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTL
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
MRLSATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY
TRNEMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRF
TFYPKSHYVTPRETLLDAVEGIKEELKDRLEYLQKANKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGRPAGAPPPTLYDYLPPDSLLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRLPSALDNRPMRFDEWEAVSPQTIFVSATPGPYEAEHAGRVVEQVVRPTGLVDPQ
VEVRPALTQVDDLLSEIRKRVDVGERVLATTLTKRMAEDLTDYLADHDVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA
ARNLNGRAILYADQVTGSMQRAIDETERRREKQIAFNQAHGIVPKGVVKDITDIMEGATV
PGARSKKRKGMAKAAEESARYEAELRTPAEITKRIKQLEEKMMQFARDLEFEAAAQLRDE
ITQLRERLIAS
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgtccgagttccagctcgttacccgttttcagccggccggcgaccagcccgaggccatt
cgtcagatggtcgagggcatcgaggccgggctatcgcaccagacgctgcttggggtgacc
ggttcgggcaagaccttcagtatcgccaacgtcatccagcaggtgcagcgcccgacgctg
gtgctggcgccgaacaaaaccctggctgcgcagttgtacggagagttcaaggcgttcttc
ccgaacaatgcggtggagtatttcgtttcctactacgactactaccagccggaggcctat
gtaccgtcgtcggacaccttcatcgagaaggatgcctcgatcaacgaccatatcgagcag
atgcgcctgtcggcgaccaaggcgctgttggagcggcgcgatgcgatcatcgtgaccacc
gtctcgtgcatctacggtctgggcagccccgagacttacctgaaaatggtccttcacgtg
gaccgtggcgacaagctcgaccagcgtgcactgctgcggcgtcttgccgacctgcaatac
acccgcaatgaaatggatttcgcccgtgccacgttccgggtgcgtggggatgtgatcgac
atcttcccggccgaatcggacctggaagccatccgtatcgagctgttcgatgacgaggtg
gagaacatcgccgcctttgacccgttgactggcgaagtcttccgtaagttgccgcgtttt
accttctaccccaagagccactacgtcaccccgcgtgaaaccctgttggacgcggtggag
ggcatcaaggaggagctaaaggaccggcttgagtacctgcagaaggccaacaagctggtg
gaggcacagcgtctcgagcagcgcacccgcttcgacttggagatgattctcgaacttggc
tactgcaatggcatcgagaactactcgcgttatctctccggccgtccggccggcgcgccg
ccacccacgctttacgactacctgccgccagattccttgctggtgatcgacgagtcccat
gtcagcgtgccgcaggtgggcgccatgtacaaaggtgaccgctcccgtaaggaaaccctg
gtcgaatacggtttccgtctgccctcggcgctggacaaccggccgatgcggttcgatgag
tgggaggcggtgagtccgcagaccattttcgtttcggccacgcccggcccttatgaagcc
gagcatgctgggcgtgtggtcgagcaggtggtacggccgactggtctggtcgacccgcag
gtggaggtacgtccggcgcttactcaggttgacgacttgctgtcggagatccgcaagcgc
gtggacgttggcgagcgggtgttggcgacgaccttgaccaagcgtatggctgaagacctg
accgattacctggcggaccatgatgtgcgggtgcgttacctgcactcggacatcgacacc
gtcgagcgggtggagatcattcgtgacttgcgtctgggtacgttcgacgtgctggtgggc
atcaacctgctgcgtgaggggttggatatgccggaggtatcgttggtggcgattctcgat
gctgacaaggagggattcctgcgttccgagcgttcattgattcagaccatcgggcgtgcg
gctcgtaacctcaatggccgggcgattctgtatgccgatcaggtgacggggtcgatgcag
cgtgccatcgacgagactgagcggcgtcgggagaagcagatagccttcaaccaggcgcat
gggatcgtgcccaagggggtggtcaaagacatcaccgatattatggaaggcgctacggtg
ccgggtgcgcgtagcaagaagcgcaaggggatggccaaggcggcggaggagagtgctcgg
tacgaggcggaattgcggacgccggcggagatcaccaaacgcatcaagcagttggaagag
aagatgatgcagtttgcgagggatctggagtttgaggctgccgcgcagttgagggatgaa
attactcagcttcgtgagcgtttgatagccagctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system