KEGG   Paenibacillus swuensis: SY83_18070
Entry
SY83_18070        CDS       T04884                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
pswu  Paenibacillus swuensis
Pathway
pswu02024  Quorum sensing
pswu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pswu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SY83_18070
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    SY83_18070
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pswu03019]
    SY83_18070
   03036 Chromosome and associated proteins [BR:pswu03036]
    SY83_18070
Messenger RNA biogenesis [BR:pswu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     SY83_18070
Chromosome and associated proteins [BR:pswu03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    SY83_18070
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ANE47884
UniProt: A0A172TLV0
Position
complement(4036341..4036583)
AA seq 80 aa
MNKSINIQDTFLNQLRKDSIPVTVYLTNGFQIRGHIKAFDNFTIIIDSEGRQQMVYKHAI
STFTPQRNVSLMQDHSNDPS
NT seq 243 nt   +upstreamnt  +downstreamnt
atgaacaaatccattaatattcaagacacttttctgaaccagcttcgcaaagattccatt
ccggtcaccgtatatttaacaaatggatttcagattcgcggacacattaaggcctttgac
aatttcacaatcattatcgacagtgaaggccggcaacaaatggtctataaacacgcaatt
tcaacattcacccctcagcgcaacgtctccctaatgcaagatcactcgaacgacccaagc
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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