KEGG   Psychromonas sp. CNPT3: PCNPT3_11845
Entry
PCNPT3_11845      CDS       T02515                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
psy  Psychromonas sp. CNPT3
Pathway
psy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PCNPT3_11845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psy03019]
    PCNPT3_11845
   03016 Transfer RNA biogenesis [BR:psy03016]
    PCNPT3_11845
Enzymes [BR:psy01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     PCNPT3_11845
Messenger RNA biogenesis [BR:psy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PCNPT3_11845
Transfer RNA biogenesis [BR:psy03016]
 Prokaryotic type
  tRNA degradation factors
   PCNPT3_11845
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 TFIIE_beta OB_Dis3
Other DBs
NCBI-ProteinID: AGH82305
UniProt: M4UP66
Position
2806428..2808920
AA seq 830 aa
MIQDPHQQREAKTYEHPVPSREFILEFMKTQDKPISRDTLFKTFSLESEEEAEGLRRRLK
AMERDGQLIWCRNATYALPDKLSLIQGIVIGHKDGFGFLKCDQEKDLFLPAHQMRFLFHG
DEILAQPVKLDHRGRTEARFVRLLKARSASIVGRYFVEDGIAMVIPDDPRLNQQILIKQE
CNGGARHGQIVVVEITDRPKARFNAMGTITEVLGQEMQPGMEVEIALRTHDIPHTWPEGL
DKELQQFTESVPESAMLGRVDLRDLPLVTIDGEDARDFDDAVYCQAEPNGGWRLWVAIAD
VSYYVRHDTILDKEAIKRGNSVYFPDQVVPMLPEVLSNGLCSLNPQVNRLCMVSEMCIDK
DGQLKEHKFYEAVMNSHARFTYTKVAKILVDKDAELRQQYKAIVPHLETLEQLYKALKKA
RHHRGGMEFETLETRFIFDENRKISSIEPLVRNDAHKIIEECMIQANVAAARFIENANAS
ALYRVHETPSEEKLTNFRSFLSDLGLVLAGGDKPAPRDYADLAEKFAGRDDQELLQTMLL
RSMKQAVYQDENLGHFGLALEQYAHFTSPIRRYPDLILHRAIKSLIGKQNTKWTKTGGYH
YQPAEITKLGEHCSMTERRADDATRDVSDALKCEYMQDHVGDVMDGTIVAVTNFGFFVRL
KALQIDGLVHVTGLLSDYYIFDAGKQTLKGERTGRTYRIGDALEVKILSVNLEDKKIDFE
LNDEAIAGSRKRAFKGNKNAIDRPMDKRAKNKKDRKTSNKHDEQPLIKEINKETEKKLSK
PKKEKKKPKYKVKQGEKNTASSKKKKTTKKNTRLGRSARAKAKVSNSNAS
NT seq 2493 nt   +upstreamnt  +downstreamnt
atgatccaagatccccatcagcaacgagaagcaaaaacatacgaacatcctgtgccgagc
cgtgaatttattttagaatttatgaaaacacaggataaaccgattagtagagatactctg
tttaaaactttttcactcgagagtgaagaagaagcagaaggattacgtcgacgcttaaaa
gcgatggagcgtgatggtcaattaatttggtgccgtaatgcaacttatgccttgccggat
aaattaagtttgatccaaggtatcgttattggacataaagatggttttggctttttaaaa
tgcgatcaagaaaaggatcttttcttaccagcacatcaaatgcgttttcttttccatggg
gatgagatcttagcacaaccggtgaaactggatcatagagggcgcactgaagcgcgcttt
gtacgtctattaaaagctcgtagcgcaagtattgttggtcgttattttgtggaagatggc
attgcgatggtgatccctgatgatcctcgtcttaaccaacaaattctcatcaaacaagaa
tgtaatggtggtgctcgccacggtcaaattgtcgttgtagagataacagatcgtcctaaa
gcacgtttcaacgcgatgggtacaatcaccgaagtattaggccaagaaatgcagccgggt
atggaagttgaaatcgccttacgcacccatgatattccacatacatggcctgaaggactc
gacaaagaattacaacaatttacagaaagtgtgcctgaaagtgcaatgctaggacgagta
gatctacgcgatttacctttagtaaccattgatggtgaagatgcacgtgactttgatgat
gccgtttactgtcaagcagagcctaatggaggatggcgcttatgggtcgctattgccgat
gtgagttactatgttcgccatgacactattttagataaagaagctatcaaacgcggtaac
tcggtgtattttcccgatcaagttgtcccgatgcttcctgaagtactttctaatggttta
tgttcactaaatccacaagtaaatcgcttgtgtatggtcagtgaaatgtgtatcgataaa
gacggtcagcttaaagagcacaagttttatgaagcggtaatgaactcccatgcgcgcttt
acttatactaaagtcgcgaagatccttgtcgataaagatgcagagcttcgccagcaatat
aaagcaatagtcccccatttagaaacactagagcagttatataaagccttgaaaaaagca
cgtcatcatcgtggtggtatggaatttgagaccctagaaacgcgctttatttttgatgag
aaccgtaaaatatcctccattgaaccattagtgcgcaatgatgcgcacaagatcatcgaa
gaatgtatgatccaagccaatgttgcagctgctcgctttattgaaaatgcaaacgcatcc
gcgttatatcgtgtacatgaaaccccgagtgaagaaaaactgactaacttccgctctttc
ttatctgacttgggcttagtcttagccggtggcgataaacctgcaccgagagattatgcc
gaccttgctgaaaagtttgcaggaagagacgatcaagagctgttacaaaccatgttactg
cgctctatgaagcaagcagtttaccaagatgaaaacttaggtcatttcggtttggcgtta
gagcaatatgcacatttcacctcacctattcgtcgctaccctgatttaattttgcatcgc
gccataaaatcattaattggtaaacaaaatactaagtggacaaaaacaggtggctatcat
taccagcccgctgaaataacaaaactcggtgagcattgctcaatgacagagcgtcgcgcg
gatgatgcgacccgtgatgtaagcgatgctttgaaatgtgaatatatgcaagatcatgtt
ggtgacgtcatggatggcaccatcgtagcagtaaccaattttggcttctttgttcgctta
aaagcgctacaaatagatggattggtacacgtaacgggtttacttagtgactattatatc
tttgatgccggaaagcaaacccttaaaggtgagcgcactggccgcacttaccgtattggt
gatgcgcttgaagtgaagattttatccgttaatcttgaagataaaaaaatcgactttgaa
ttaaatgatgaagcgattgcgggtagtcgaaaacgggcttttaaaggtaataaaaatgca
atcgatcgcccaatggataaacgtgctaaaaacaaaaaagatcgtaaaacaagcaataaa
cacgatgagcagccattgatcaaagaaattaacaaagaaactgagaaaaaattgtctaaa
cctaaaaaagaaaaaaagaaaccaaaatacaaagtaaaacaaggtgaaaaaaatacagct
tcatcaaagaaaaagaaaaccacaaagaaaaatacacgcttaggtcgcagtgcacgcgca
aaagcaaaagtatccaatagcaacgcgtcataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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