KEGG   Psychrobacter sp. DAB_AL43B: DABAL43B_0411
Entry
DABAL43B_0411     CDS       T04748                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
psyc  Psychrobacter sp. DAB_AL43B
Pathway
psyc03030  DNA replication
psyc03410  Base excision repair
psyc03420  Nucleotide excision repair
psyc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:psyc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DABAL43B_0411 (ligA)
   03410 Base excision repair
    DABAL43B_0411 (ligA)
   03420 Nucleotide excision repair
    DABAL43B_0411 (ligA)
   03430 Mismatch repair
    DABAL43B_0411 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psyc03032]
    DABAL43B_0411 (ligA)
   03400 DNA repair and recombination proteins [BR:psyc03400]
    DABAL43B_0411 (ligA)
Enzymes [BR:psyc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DABAL43B_0411 (ligA)
DNA replication proteins [BR:psyc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DABAL43B_0411 (ligA)
DNA repair and recombination proteins [BR:psyc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DABAL43B_0411 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DABAL43B_0411 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     DABAL43B_0411 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DABAL43B_0411 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT 5_3_exonuc RNA_pol_A_CTD
Other DBs
NCBI-ProteinID: SLJ83626
UniProt: A0A1U6GJE0
Position
I:479200..481308
AA seq 702 aa
MTDPILSTAAHTKNNQKTTAQPANEIDTDNAQNEIVAQMRTLIESLKTHNYAYYVLDNPI
LEDSEYDQLRRSLLELEEEYPDLVQPDSPINQVGDMPLSAFTQVRHDVPMLSLGNVFEYD
DLRDFMRRVNDRLSDSQKNPEYEIELKLDGLAVSLKYEYGQFVQAVTRGDGQTGEDITQN
AKTIRNLPLWLAAATDIPLLEVRGEVLMPKAGFERLNRLAAEKEEKTFANPRNAAAGSLR
QLDPSIAASRPLAFYCYSVNQGLPIAIETQSAALAWLKDIGFTVSAVEVVQNPREAQAYY
ESVIKTRADLPFEIDGLVIKVNSLALQQQLGFLSREPRWATAYKFPAETVMTRLHAIEWQ
VGRTGQITPVGKLEPVKVGGVTVSNVTLHNFGEIQRLDVRAGDMVSVHRAGDVIPKVTRV
WHEQRPADSEPVKLPSTCPVCDSPVVLPKDEALARCTGGLFCPAQQQEALIHFVSRRAMD
IDGLGASWLISFFEHGLVKTVADIYQLHNHQEELITLEKLGEKSVQNIINAIEASKHTTL
ARFIYALGIRGVGETTAQNLAQQFGDLDALMSASIEKLLLTPDVGAITAELAYKFFRAPH
NIEVITALREAGVHWDKVEQKVSSDLPLDGQTWVITGALASMARDEAKAKLQALGAKVSG
SISAKTTALLAGEKAGSKMAKAEKLGVKVVGEEEFLALVEKV
NT seq 2109 nt   +upstreamnt  +downstreamnt
atgactgatcctatcttatcaaccgctgctcacactaaaaacaatcaaaaaacgactgcg
caacctgccaatgaaatcgatactgacaatgctcaaaacgaaatcgttgcccagatgcgt
acgcttattgagtcgctcaaaacccataactatgcttattatgtgcttgataatcccatc
ttagaagacagcgaatacgatcagttgcgtcgctctttattggagcttgaagaagaatac
ccagatttggtgcagcctgacagcccgattaatcaagttggcgatatgccgctatctgct
tttacccaagtcaggcatgatgtgccgatgttgtcgcttggtaatgtctttgaatatgat
gatttgcgcgattttatgcgccgcgtcaatgaccgtctaagcgactctcagaaaaatcct
gaatatgaaatagagttaaaacttgatggcttggcggtctcactaaaatacgagtatgga
cagtttgtacaagcagtcacgcgcggcgatgggcaaacgggtgaggacattacccaaaat
gccaaaaccattcgtaatttgccgctatggcttgctgctgctactgatatcccgctgtta
gaagtgcgtggcgaagtattaatgccaaaggcaggctttgagcgccttaatcggcttgcc
gcagaaaaagaagaaaagacttttgccaatccgcgcaatgctgctgctggtagcttacgc
caacttgacccaagtatagccgccagccgtccgctagccttctattgttattcagtgaat
caagggctaccaattgccattgaaacccaatcagcagccttagcttggctaaaagacatc
ggctttaccgttagtgcggttgaggtagtgcagaacccacgcgaagcccaagcttattat
gagtcagtgataaagacacgcgcagacttaccgtttgagattgatggcttggttatcaag
gtcaatagcttagcgctgcaacaacagctcggctttttatcccgtgagccgcgctgggca
actgcctataaattccctgctgaaaccgtcatgacgcgtttgcacgctatcgaatggcaa
gttggacgtaccggacaaatcaccccagtcggtaagttagagccggtaaaagtaggcggt
gtaaccgtcagcaatgtcaccttgcataactttggtgagattcagcgtcttgatgtacgc
gcaggcgacatggtcagcgtccatcgtgctggcgacgtcatccccaaagtcacccgcgtc
tggcatgagcagcgtccagctgattccgagcctgtaaagctaccgtccacttgtccagta
tgtgattctccagtcgtattacccaaagatgaagccttagctcgctgtaccggtggttta
ttttgtcccgcgcagcagcaagaagcgcttattcactttgtctcgcgtcgagcgatggat
attgatggcttaggtgcaagttggttgattagcttctttgagcatggcttggtgaagacc
gtcgctgatatctatcagctgcacaatcatcaagaagaactgattacgcttgaaaaacta
ggcgaaaagtcggtgcaaaatattatcaacgccattgaagctagtaaacatacgacactg
gcgcgctttatctatgcgctgggtattcgcggtgtcggtgaaacgactgcacaaaacctc
gctcagcaatttggcgaccttgatgccttaatgtctgccagtatcgaaaaactgctactt
acgccagatgtgggcgctattaccgctgagcttgcttataagttcttccgtgcaccgcat
aatatcgaagtcattaccgcattacgtgaggcaggcgtccattgggataaagtcgagcaa
aaagtatctagtgatttaccacttgatgggcaaacgtgggttatcactggcgcgctggca
agtatggctcgagatgaagcgaaagcaaaacttcaagccttgggtgcaaaagtatccggc
agtatttcagctaagactaccgcgttattggcaggggaaaaggctggctcgaagatggcg
aaggctgaaaaattgggtgtaaaggttgtaggtgaggaagagtttttggcgttggtagaa
aaggtatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (29)   

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