KEGG   Psychrobacter sp. DAB_AL43B: DABAL43B_1014
Entry
DABAL43B_1014     CDS       T04748                                 
Symbol
dnaQ3
Name
(GenBank) bifunctional ribonuclease HI/DNA polymerase III, epsilon subunit
  KO
K14159  ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7]
Organism
psyc  Psychrobacter sp. DAB_AL43B
Pathway
psyc03030  DNA replication
psyc03430  Mismatch repair
psyc03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:psyc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DABAL43B_1014 (dnaQ3)
   03430 Mismatch repair
    DABAL43B_1014 (dnaQ3)
   03440 Homologous recombination
    DABAL43B_1014 (dnaQ3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psyc03032]
    DABAL43B_1014 (dnaQ3)
   03400 DNA repair and recombination proteins [BR:psyc03400]
    DABAL43B_1014 (dnaQ3)
Enzymes [BR:psyc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     DABAL43B_1014 (dnaQ3)
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.4  ribonuclease H
     DABAL43B_1014 (dnaQ3)
DNA replication proteins [BR:psyc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     DABAL43B_1014 (dnaQ3)
    RNase H
     DABAL43B_1014 (dnaQ3)
DNA repair and recombination proteins [BR:psyc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     DABAL43B_1014 (dnaQ3)
SSDB
Motif
Pfam: RNase_H RNase_T Rv2179c-like RNase_H_2 DUF6354
Other DBs
NCBI-ProteinID: SLJ84212
UniProt: A0A1U6GL17
Position
I:complement(1173468..1175168)
AA seq 566 aa
MSDNRTSAQQLNTNNAMNPLAAKPDTTVAYTDGACKGNPGAGGWGAHLIFSDGRTQDLYG
GDNETTNNRMELMGAIQALKHSPHGQNLEIWTDSSYVKKGITEWIEGWKKRGWKTASKKP
VANQDLWQQLDELCQPRDVDWHWVKGHTGHAGNEKADELANLGVTSSSEDLSTVDTQDTA
KKKEQIVSDKKPSTNDDWLKFDPLGFDMMDDELDEELSDDHMVVSQILEKQTLESQISES
HILDNYGDDKNHVDDMMHRSDIVEANRYQDNASKPTTTTDIPEAQTFMTDTTINANMPNI
HTDIEATIDTETPKFDGDTSRANPHFKPLLPQPINRHESDRQLIMDTETTGLDPLKGDRI
VEVGIVEMVGRKFTGEKLHVYINPQRGMDEEVIRIHGISEAFLTDKPTFDQVAQSLYDFM
DGAEVIAHNATFDMNFLNMEFAKVGMHDFAERVKVTDSLVMAKQQYPGQKNTLDALVRRL
DVGKQDRTFHGALLDSEILAEVYLAMTGGQVTLAIEEDTQADGGHTAHASFANLAALLLE
SSTDESANQSWYATLAEDYPELKAKM
NT seq 1701 nt   +upstreamnt  +downstreamnt
atgtcagacaatcgtacctcagcgcagcaacttaataccaacaacgctatgaatccatta
gctgccaaaccagacacaacggttgcctatacggacggtgcatgtaaaggtaaccccggc
gctggcggttggggcgcgcatcttatatttagtgacgggcgtacccaggatttgtatggt
ggcgataacgagacgaccaataatcgtatggagctgatgggtgcgatacaagcattaaaa
catagcccacatgggcaaaaccttgagatttggacagactcaagctatgtaaaaaaaggt
atcaccgaatggattgagggttggaaaaaacgaggctggaaaacagccagtaaaaaacca
gtcgccaatcaagacctttggcaacagttggacgagctttgccaaccacgcgatgttgat
tggcattgggtcaaaggtcatactgggcatgctggcaatgaaaaggcagacgagctggca
aatttaggcgtgacgtccagtagtgaagatttatcgacagtagacacacaagataccgct
aaaaaaaaagagcaaatagtgtctgataaaaagccatccacgaacgatgattggctaaag
ttcgatccattaggttttgatatgatggatgatgagcttgatgaagaactatcagatgat
catatggtggtaagtcagatattagaaaaacagacgttagaaagccagatatcggaaagt
catatactggacaattatggtgatgataaaaaccatgtcgatgatatgatgcatagaagc
gatatagtagaagcaaatcgctatcaggataatgctagcaaaccaacgactaccacagat
ataccggaagcgcagacctttatgactgataccacgattaacgctaatatgccaaatata
catactgatatagaagctactatagatactgaaacgccaaaattcgatggcgatacgagc
cgtgccaatccacattttaaaccgctactacctcagcctatcaatcgtcatgagtctgac
cgccaactcatcatggatactgagaccacaggtcttgatccgttaaagggcgatcgcatt
gtcgaagtcggtattgtagagatggtcgggcgtaagtttaccggcgaaaagttacacgtc
tatatcaatccacagcgcggtatggatgaagaagttattcggattcacggtatttctgaa
gcctttttaaccgacaaaccaacctttgatcaagtcgctcagtcgctctatgactttatg
gacggtgcagaggtcatcgctcataacgccacgtttgatatgaatttcctaaatatggaa
tttgccaaggtgggtatgcatgactttgccgagcgggtaaaagtgactgactcgctggta
atggccaaacagcaatatcctggacaaaaaaacaccctagacgctctcgtacgtcgttta
gatgttggtaagcaagaccgtacttttcacggggcattactagactcagagattttagct
gaagtttatctggcgatgaccggcggacaggtcacactggcaattgaggaagacactcaa
gcagacggcggacacactgcccatgccagctttgccaatttggctgctttattgcttgag
tcgagtaccgatgagagcgccaatcaaagctggtatgctacgctcgcagaagactatcct
gagctaaaagccaaaatgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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