KEGG   Psychrobacter sp. DAB_AL43B: DABAL43B_2748
Entry
DABAL43B_2748     CDS       T04748                                 
Symbol
vacB
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
psyc  Psychrobacter sp. DAB_AL43B
Pathway
psyc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psyc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DABAL43B_2748 (vacB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psyc03019]
    DABAL43B_2748 (vacB)
   03016 Transfer RNA biogenesis [BR:psyc03016]
    DABAL43B_2748 (vacB)
Enzymes [BR:psyc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     DABAL43B_2748 (vacB)
Messenger RNA biogenesis [BR:psyc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     DABAL43B_2748 (vacB)
Transfer RNA biogenesis [BR:psyc03016]
 Prokaryotic type
  tRNA degradation factors
   DABAL43B_2748 (vacB)
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1
Other DBs
NCBI-ProteinID: SLJ85913
UniProt: A0A1U6GQW1
Position
I:3218842..3221109
AA seq 755 aa
MSWNDPNASAEAQKYINPVPSRELILSTITEQGELTHQQLAKVFNITDPDQFDALGNRLK
AMVRDGQVNRDGRPYRFRTVTQHDVVRGTVSAHPKGFGFVLLADMPDLFLHEKQMRWVFN
GDIVDAIGTSTDNRGRMEGRIVDVTERHQNHFIGTLAQDEDGYCVELGSPNNHQPITVTE
DNVQTLGAKIGSPVKVDVIDWPNQHEFATGKITELLNDDNDRELIIETTLLNYDIPSEFS
EAALKQANDYREPSGKDLKGRTDLRELPLVTIDGADARDFDDAVFAEKRSGGNYRVLVAI
ADVSHYVTPNSPLDLDAFERGTSVYFPHRVIPMLPEVLSNGLCSLNPNVDRLCMVADIKI
SRAGKVTGYDFYPAVMNSQARLTYDQVNDYLANPKDSSIPKSLTENKEVKKSVDTLHQLY
ELLLKKREERHAMEFETVETYIEFNEKGGIAAILPRTRGDAHKLIEECMLLANTSAANFA
LKNELPVLYRNHDKPDGEKSMRIHEYAKNFGLSFPEESPTQADYQRIIEATKDRPDAISI
HSMLLRSMMQANYSPDNIGHFGLAYDEYSHFTSPIRRYPDLMLHRAIKAKVTNSPQPVME
FSLEGAGTQTSDTERRAEKASRYVESWLKCHYMKDHVGEEFEGVVTTVTSFGLFVTLTDL
YIDGLVHISNVGNDFFVYDEQQQQLVGKDKGTLFGLGDSVKVKVAGVNMDLLQIDFDLKE
KLQASKMNQSKANPAKKSPAKKTSSRNNKGASKKS
NT seq 2268 nt   +upstreamnt  +downstreamnt
atgagttggaatgatccaaacgcctcggctgaagcccaaaaatacattaaccctgttcct
agtcgtgagctgatattgagcacgattacagagcaaggtgaattgacgcatcaacagctg
gcaaaagtttttaatatcactgatcctgatcaatttgatgctttaggcaatcgcctcaaa
gcgatggttcgtgatggacaggtcaatcgcgatggtcgtccttatcgctttcgtacagtg
acgcagcacgatgtcgttagaggcacagtgtctgctcaccctaaaggctttggctttgta
ttattagctgatatgcccgatttattcttgcatgaaaaacaaatgcgctgggtgtttaat
ggcgacatagttgatgcgatcggtacgtcaaccgacaaccgtggtcgcatggaaggccgt
attgtcgacgtgactgaacgtcatcaaaaccactttatcggtacacttgctcaagatgaa
gatggttattgtgtggagctcggtagccctaacaatcatcaaccgattaccgttactgaa
gataatgtacaaacactgggcgcaaaaattggtagtccagtaaaagtggatgtcatcgat
tggccgaatcagcatgagtttgccacgggtaaaatcactgaattgctcaacgatgacaat
gatcgcgagctgattattgagaccacactactcaactacgatattccttctgaatttagc
gaagcggcactcaaacaagccaatgattatcgcgagcccagtggcaaagacttaaaaggt
cgtactgatttacgtgaattgccattggttacgattgatggcgcagatgcacgtgatttt
gatgatgccgtatttgctgaaaaacgtagtggtggtaactatcgcgttttagtcgctatc
gctgatgtcagtcattatgtcaccccaaattctccactggatttagatgctttcgagcgt
ggtacttcagtatatttcccgcatcgtgtgattccgatgttgcctgaagtactatcaaac
ggtctgtgttcattgaaccctaacgtcgatcgcttatgtatggttgccgacattaaaatc
tctcgtgcaggtaaagtcactggttatgacttttatccagcggtgatgaattcacaggcg
cgcttaacatatgatcaagtgaatgattatctggccaatccaaaagacagtagtattcct
aagtcattaaccgaaaataaagaggtcaaaaagtcggtcgatacgctacatcaattgtat
gagttactgcttaaaaagcgtgaagaacgtcatgcgatggagtttgagactgtcgagact
tatatcgagttcaacgaaaaaggtggtatcgctgctatcttgccacgtactcgtggtgat
gcgcataagttgattgaagagtgtatgttgcttgccaatacgtctgctgcaaactttgcc
ctaaaaaacgagctgcctgttttatatcgtaaccatgataaacctgatggcgaaaagtcg
atgcgtattcatgaatacgctaaaaactttggtctaagcttcccagaagaaagcccaacc
caagcagattatcagcgcattatcgaagcgactaaagaccgtcctgacgcgattagcatc
catagcatgttactgcgctcgatgatgcaagccaattattcacctgacaatatcggtcac
tttggtttggcttatgacgaatatagccactttacctcgcctatccgccgttaccctgat
ttaatgctacatcgtgccattaaggcaaaggtgaccaatagcccgcagccagtaatggaa
ttctctttagagggagctgggacgcaaacgtcagatactgagcgccgtgctgaaaaagca
tcacgttatgtagaatcatggctcaaatgtcattatatgaaagaccatgtcggcgaagag
ttcgagggtgttgttactacggttacaagctttggtttatttgtcacattgactgacctt
tatatcgatggtttggtacacatctctaatgtgggcaatgacttctttgtctatgacgaa
cagcagcagcagcttgtcggtaaagacaaaggtacgttatttggattgggtgattcagtc
aaagtcaaagtagctggcgtgaatatggatctgctgcaaattgacttcgatttaaaagaa
aaactgcaagcaagcaaaatgaatcaaagcaaagcgaatccagccaagaaaagcccagct
aagaaaacaagcagtcgcaacaataaaggcgctagcaagaaaagctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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