KEGG   Psychrobacillus sp. AK 1817: D0S48_13105
Entry
D0S48_13105       CDS       T06219                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
psyh  Psychrobacillus sp. AK 1817
Pathway
psyh03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:psyh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    D0S48_13105 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psyh03021]
    D0S48_13105 (rpoB)
   03400 DNA repair and recombination proteins [BR:psyh03400]
    D0S48_13105 (rpoB)
Enzymes [BR:psyh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     D0S48_13105 (rpoB)
Transcription machinery [BR:psyh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     D0S48_13105 (rpoB)
DNA repair and recombination proteins [BR:psyh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      D0S48_13105 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: QEY21530
UniProt: A0A5J6PLC8
Position
2633959..2637513
AA seq 1184 aa
MTGQLVQYGQHRQRRSFARISEVLELPNLIEIQTASYEWFLEEGLREMFKDISPIEDFTG
NLSLEFVDYSLNDPKYSVDESKERDATYAAPLRVKVRLHNKETDEVKEQDVFMGDFPLMT
ETGTFVINGAERVIVSQLVRSPSVYFHDKTDKNGKKGFGATVIPNRGAWLEYEIDAKDVV
YVRIDRTRKLPVTVLLRALGFGSDQEIIDLLGDNEYLRNTLEKDNTETTEKALLEIYERL
RPGEPPTVESAKSLLYSRFFDPKRYDLANVGRYKMNKKLHIKNRLFNQTVAETLVDPETG
EILVEAGTLIDRRVLDRLIPHLENGIGFKTFSQVGGVLEDDITVQSIKIYAPNDDEQKEI
NVISNAYVETEVKNITPADIVSSIGYFFNLLFNVGNTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSINDTQAIVPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT
HKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFG
FIETPYRRVDPETGLVTSRIDYLTADEEDNYVVAQANSPLSDDGAFVNEEVVGRFRGDNT
VFRRDQIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLNPEAPFVGTG
MEHVNARDSGAAVIAKYHGIVEHVEAKEIRVRRIEEVDGKEVKGDLTTYKVHKFERSNHG
TSINQRPIVKVGDRVKPLDILADGPSMEQGELALGRNVLVAFMTWDGYNYEDAVIMSERL
VKDDVYTSVHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDDRGIIRVGAEVRDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREDGDEL
SPGVNQLVRAYIVQKRKISVGDKMAGRHGNKGVISRILPEEDMPFLPDGTPVDIMLNPLG
VPSRMNIGQVLELHLGMASRLLGVHMASPVFDGANEEDVWNTMEEAGLNRDGKTTLYDGR
SGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQSLGMD
VKMLTIDEEEIELRDLDEDDDIPAADALGLLPLANEEEPVGNLE
NT seq 3555 nt   +upstreamnt  +downstreamnt
ttgacaggtcaactagttcagtacggacaacaccgccagcgtagaagttttgcgcgtatt
agtgaggtgctagaattaccgaatcttattgagattcaaacagcatcttatgaatggttc
cttgaagaaggtttgcgtgaaatgtttaaggatatttcacctatcgaggattttacaggc
aatctatcattggagtttgtcgactatagtttgaatgatccaaaatattcagtcgatgaa
tctaaagaacgtgacgcaacatacgcagcaccacttcgcgtaaaagtacgtctccacaac
aaagaaacggatgaagtgaaagaacaagatgtctttatgggtgatttcccactcatgaca
gaaactggtactttcgttattaatggtgctgagcgagtaatcgtatctcagttagtccgt
tcaccaagtgtttacttccatgacaaaacagacaaaaatggtaaaaaaggttttggtgct
actgttattccaaaccgtggtgcatggcttgaatacgagattgatgcaaaggacgtagtg
tacgttcgaattgacagaactcgtaaattaccagtaactgttttacttcgcgctttagga
ttcggttcagatcaagaaatcattgatttactcggtgacaatgagtatttacgtaacacg
ctagaaaaggacaacacagaaactactgaaaaagcgttattagaaatctatgaacgctta
cgtccaggcgagccaccaactgtggaaagtgcaaagagcctgctatactctcgcttcttt
gacccaaaacgctatgatttagcaaatgttggtcgttacaaaatgaacaaaaaattacac
ataaaaaatcgtttgtttaaccaaacagtagcggaaacgttagtggatccagaaacaggt
gaaattttagttgaagctggtacactgatcgatcgtcgtgtattagacagactgatccct
catttggaaaatggaattggatttaaaacattctctcaagttggaggagttttagaagac
gatattacggttcaatcgattaaaatttatgcaccaaatgatgacgagcaaaaagagata
aatgtaattagtaatgcgtatgtggaaaccgaagttaaaaacattacgcctgcagatatc
gtgtcatctattggttatttctttaacctattattcaacgttggaaacacggatgatatt
gaccatctaggaaaccgtcgtttacgttcagttggagagttattacaaaaccaattccgt
attggtctttctcgtatggagcgtgtagttcgtgagcgtatgtcaataaacgatacacaa
gcaattgttccacaacagctgataaatattcgtccagtaattgcatctatcaaggaattc
tttggtagttctcaattatctcagttcatggaccaaacaaatccacttgcagagttaact
cataaacgtcgtctttctgctttaggacccggtggtttaacgcgtgagcgtgcaggcttc
gaggttcgtgacgttcactactctcactatggtcgtatgtgtccaattgaaactcctgag
ggacctaacattggtttaattaactcactttccagttttgcgaaagtaaataaatttgga
tttatcgaaactccttaccgtcgagttgaccctgaaactggtcttgtaacttcacgtatt
gattacctaacagcagatgaagaggacaactatgttgttgcgcaagctaactctccactt
tctgacgacggtgcattcgtaaacgaagaagtagttggccgtttccgtggtgacaacacg
gtatttagaagagatcaaattgactacatggacgtatcaccgaaacaagtagtttctgct
gctacagcatgtattccattcttagaaaacgatgactctaaccgtgccctaatgggagcg
aacatgcaacgtcaagctgttcctcttttaaacccagaagctccgtttgtaggaactggt
atggagcatgtcaatgcacgtgattcaggtgccgctgttattgctaagtatcacgggatc
gtagaacatgtagaagcgaaagagattcgcgttcgtcgcattgaagaagtggatggaaaa
gaagttaaaggtgatttaacaacttataaagttcacaaattcgaacgttctaaccatggt
acatctattaaccaacgtccaatcgttaaggttggagaccgtgttaaacctttagatatc
cttgcagacggtccatctatggaacaaggagagcttgcgctaggacgtaacgtactagtt
gccttcatgacatgggatggatataactacgaggatgctgtaatcatgagtgagcgtctt
gtgaaagatgatgtctatacttctgtgcatattgaagaatacgagtcagaatcacgtgat
acgaaacttgggccagaggaaattacgagagacattcctaacgtcggagaagatgcttta
cgtaacttagatgaccgtggaattatccgtgtcggtgctgaagttagagacggagatatt
ttagtaggtaaagtaacgcctaaaggagttacagaacttactgctgaagaacgtctactt
cacgctattttcggagaaaaagctcgtgaagttcgcgatacatctctacgtgtacctcat
ggtgcaggcggaattgtattagatgtaaaagtcttcaatcgtgaagatggggatgaacta
tcacctggtgttaaccaactagtacgtgcttatatcgttcaaaaacgtaaaatctctgta
ggggataaaatggccggacgacatggtaacaaaggggtaatctctcgtattcttccggaa
gaagatatgcctttccttccagacggaacaccggtggacattatgttaaatccactaggg
gtaccttctcgtatgaatattgggcaagtactagagcttcacttaggtatggcttctaga
cttcttggtgttcacatggcttcacctgtatttgatggtgccaacgaggaagatgtatgg
aacacgatggaagaagcaggcttgaaccgtgatggtaaaacgactctttatgatggtcgt
tcaggtgaaccatttgataaccgcgtttcagtaggggttatgtatatgatcaaacttgcc
cacatggttgatgacaagcttcatgctcgttcaacaggaccttattctcttgttacgcaa
cagcctcttggtggtaaagcgcaattcggtggacaacgttttggtgagatggaagtatgg
gcactagaagcatatggtgctgcttatacattacaagaaatcttaacggttaaatctgat
gacgtggttggacgtgtgaaaacatatgaagccatcgttaaaggtgaaagtgttcctgag
ccaggcgttcctgaatcattcaaagtattgattaaagaactacaaagtttaggtatggac
gttaagatgttaacaattgacgaagaagaaattgaacttcgtgatttagatgaagatgac
gatattccggcagctgatgcacttggtttattaccactagctaatgaagaagagccagtt
ggaaacttagagtaa

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