KEGG   Psychrobacillus sp. AK 1817: D0S48_13110
Entry
D0S48_13110       CDS       T06219                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
psyh  Psychrobacillus sp. AK 1817
Pathway
psyh03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:psyh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    D0S48_13110 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psyh03021]
    D0S48_13110 (rpoC)
   03400 DNA repair and recombination proteins [BR:psyh03400]
    D0S48_13110 (rpoC)
Enzymes [BR:psyh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     D0S48_13110 (rpoC)
Transcription machinery [BR:psyh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     D0S48_13110 (rpoC)
DNA repair and recombination proteins [BR:psyh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      D0S48_13110 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: QEY21531
UniProt: A0A5J6PLV7
Position
2637648..2641250
AA seq 1200 aa
MIDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRSLEEVIYFASYVVIEPADTPLEKKQLLSEKEYRAYRDKFGSKFQAAMGAEAIKRLLQ
EIDLESETENLKEELKTAQGQRRTRAIKRLEVVESFRNSGNKPDWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVERGLAHNIKSAKRKIERMHPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKGATGEGSTFYGPEEVLIAYNTGHVHLHTRIAIA
ASSLKNPTFTEEQNKMLLLTTVGKVIFNEILPETFPYINEPTDYNLQIETPEKYFISTTT
DVKKHIESTDLVQPFKKKILGNIIAEVFKRFHITETSKMLDRMKSLGFKYSTKAGITIGI
SDIVVLPDKGEILEEAQGKVDKVMKQFRRGLITEEERYASVIGHWSRAKEVIQEKLMRSL
DNMNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLLIGSLMEGTEVIEEFG
ERIVGRHTKKTIFHPETGKVMLERDGLITQDIARLIEEAGITQLTIRSAFTCNTKHGVCK
KCYGLNLATGDTVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGQAVISEISGTVTEIDEIREGQKEITIQGNVETRKYLAPYNARLKVIVNDVIQR
GQVLTEGSVDPKELLKVKDVSTVQEYLLKEVQKVYRMQGVEIGDKHIEVMVRQMLRKVRV
IEAGETDLLPGSLLDIHQFAEANKEAVLQGKIPATCRPVILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRQIQITTNEADAEKETVNAE
NT seq 3603 nt   +upstreamnt  +downstreamnt
ttgatagacgttaataattttgagtatatgaaaattggtttagcttcaccagataaaatc
cgttcatggtcttatggagaagtaaaaaaacctgaaacaattaactatcgtacactaaaa
cctgaaaaagatgggttattctgtgagcgtattttcggtcctacaaaagactgggaatgt
cattgtggtaaatacaaacgtgttcgctataaaggcgtagtttgtgatcgatgtggagta
gaggttacgcgttcgaaagtacgtcgtgagcgtatgggtcacattgaattggcagctcct
gtatcacatatttggtatttcaaaggtattccaagccgtatggggctgattttggatatg
tctccaagatcactagaggaagtaatttattttgcttcttacgttgtaattgaaccagcg
gatacacctcttgaaaagaaacaattactttctgaaaaagaataccgtgcataccgagat
aagtttggtagtaagttccaagctgctatgggtgcagaggctattaagcgtctattacaa
gagatagatctagaaagtgaaactgagaacttaaaagaagagttaaaaacagcacaaggt
caacgccgtacacgcgctattaaacgtttagaagtagtagaatctttccgtaactctggc
aacaagcctgattggatgatcttagatgtacttccggttattccaccagaattacgtcca
atggttcaattagacggcggacgctttgctacatctgatttaaatgatttataccgtcgt
gtaatcaaccgtaataaccgtttaaaacgtctattggacttaggtgctcctagcatcatt
gttcaaaacgaaaaacgtatgcttcaagaagcagttgatgcattgattgataatggtcgt
cgtggccgtccagtaacaggaccaggtaaccgtccattaaagtcactctcacatatgctt
aaagggaagcaaggtcgtttccgtcaaaacttacttggtaaacgtgtagactattctggt
cgttccgttatcgtagtaggaccaaacctaaaaatgtaccaatgtggtcttccaaaagaa
atggcaattgaattattcaaaccatttgttatgaaagaactagttgaacgtggtttggcg
cataacattaagagtgcaaaacgcaaaattgaacgtatgcatccagaagtttgggatgta
ttagaagatgtaatcaaggagcatccggttttactaaaccgcgcacctactcttcaccgt
ttaggtatccaagcgtttgaaccaacattagtagaaggtcgtgcaattcgtcttcacccc
cttgtatgtacagcatataacgctgactttgatggtgaccaaatggctgttcacgtacct
ttatcagcagaagctcaagcggaagcacgtctactaatgcttgctgcacaaaacattttg
aacccgaaagatggaaaaccagttgttacgccatctcaagatatggtactaggtaactat
tacttaacacttgagcgtaaaggcgcaacgggagaaggttctacattctacggtccagaa
gaagtgctaattgcatataatacaggtcatgtacatttgcatactcgtattgccatagct
gcatcttccttgaaaaatccaacatttacggaagaacaaaacaagatgttgttgttgact
actgtaggtaaagtaatcttcaacgaaatacttcctgaaacgttcccgtatattaacgaa
ccaacggattacaatttacaaatagaaacacctgaaaaatatttcatctctactacgaca
gacgtgaaaaaacatattgaatctacggatcttgttcaaccattcaagaagaaaatcctt
ggaaatatcatcgcagaagtatttaaacgtttccatattacagaaacatctaaaatgctt
gaccgtatgaaatcacttggatttaaatattcaactaaagctggtattacaatcggtatc
tctgatatcgtcgtacttccagataaaggtgaaattcttgaagaagcacaaggtaaagta
gataaagtaatgaaacaattccgtcgtggtctaataacagaggaagaacgttatgcaagc
gttattggacactggagtagagcgaaagaagttattcaagaaaaactgatgagatcactt
gataacatgaacccaatcttcatgatgagtgactctggggcccgtggtaacgcgtccaac
ttcactcagcttgcaggtatgcgtgggctgatggccaatccggctggtcgaattatcgaa
cttccgattaaatcatcgttccgtgaagggttaacagtacttgaatatttcatctcaacg
catggtgctcgtaaaggtcttgccgatacagctcttaaaacagccgattcaggttacctg
actcgtcgacttgttgacgtagctcaagatgtaatcgtacgtgaggatgactgtggaaca
gaccgtggcttactaataggctctcttatggaaggtacggaagtaattgaagagtttggc
gaacgtattgttggacgtcacacgaagaaaacaatcttccatccggaaacaggaaaagta
atgttagaaagagatggcttgattactcaagatatcgcacgtcttatcgaagaagctgga
attactcaattaactatccgctcagcatttacttgtaatacaaaacatggtgtatgtaaa
aaatgttacggcttgaacttagcaactggagatacggtagaagtaggggaagcggtaggt
attatcgcagctcagtctatcggagaacctggtacacagttaacgatgcgtacattccat
acaggtggggttgccggtgatgatattacacaaggtcttccacgtattcaagagattttt
gaagctcgtaatccaaaagggcaagcggttatttctgagatttctggtaccgttactgaa
attgacgaaattagagaaggacaaaaagaaattacaattcaaggtaatgtagaaacacgt
aaatatctagctccatacaatgcacgtctaaaagtaatagtaaatgacgttattcaacgt
ggtcaggtattaacggaaggttctgtagaccctaaagaattgttaaaagtaaaagatgtt
tctactgttcaagagtacttattaaaagaagtacaaaaagtttatcgtatgcaaggggta
gaaattggggataaacatatcgaagtaatggttcgccaaatgcttcgcaaagtgcgcgta
attgaagcaggagaaactgacttgctacctggttcacttttagatatccaccaatttgct
gaagcgaataaagaagcagttttacaaggtaaaatccctgcaacttgtcgcccagttatc
cttggtatcacaaaagcttctcttgaaacagaatcattcttatcagcggcatctttccaa
gaaacgactcgtgtcttaactgatgcagcgattaaaggaaaacgtgatgagctacttgga
ttgaaagaaaacgtaattattggtaaactagttcctgctggtactggtatgcaacgttac
cgtcaaattcaaataactacaaacgaagccgatgctgaaaaagaaacagtaaacgcagaa
taa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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