KEGG   Psychrobacillus glaciei: PB01_13345
Entry
PB01_13345        CDS       T06231                                 
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
psyo  Psychrobacillus glaciei
Brite
KEGG Orthology (KO) [BR:psyo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:psyo03016]
    PB01_13345 (thpR)
Enzymes [BR:psyo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     PB01_13345 (thpR)
Transfer RNA biogenesis [BR:psyo03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    PB01_13345 (thpR)
SSDB
Motif
Pfam: 2_5_RNA_ligase2 LigT_PEase AKAP7_NLS HVSL Toprim_Crpt
Other DBs
NCBI-ProteinID: QFF99745
UniProt: A0A5J6SP91
Position
complement(2838009..2838554)
AA seq 181 aa
MNTHYFIGIKIPSNLATSIVEARDTTNLHETHKILPVAEDLHITLYYLGQIEQNSVDQII
QSLDQNIDWKSFDLTTNGISHFGNNLTPRVVYTALKESESLTLLQEKVTRTISNYIEVDN
RKEFNAHITIAKKWASKGLLSMENFPLESTTFKVTNISLFRVSPTNTPRYEELYIMHSGG
G
NT seq 546 nt   +upstreamnt  +downstreamnt
atgaacacacattattttataggtattaaaattccgagtaatcttgcaacttctatcgtt
gaagcaagagatacaactaatttgcatgaaacgcataaaatattgcctgttgcggaggac
ttgcatattacgctctattatttaggccagattgagcaaaattctgtagatcaaataatc
cagtcgttagatcaaaatatcgactggaaatcttttgatctaacgacgaatggaatctct
cattttggaaataatctcactccgagagtagtatatacagcactaaaagaaagtgaatct
ttaacattattgcaggaaaaggttactagaacaatttctaattatatagaagttgataat
cggaaagagtttaatgcccatattacgatagccaaaaaatgggcctctaaaggattacta
tccatggaaaattttcctcttgaaagtacaacctttaaggttactaatatctctttattt
agagtaagtccaactaatacacctcgctacgaggaattatatatcatgcatagtggggga
ggttaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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