KEGG   Pseudoalteromonas tetraodonis: PTET_a0131
Entry
PTET_a0131        CDS       T05282                                 
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:3.6.4.13]
Organism
ptd  Pseudoalteromonas tetraodonis
Pathway
ptd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ptd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PTET_a0131 (rhlB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptd03019]
    PTET_a0131 (rhlB)
Messenger RNA biogenesis [BR:ptd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PTET_a0131 (rhlB)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 ERCC3_RAD25_C AAA_22
Other DBs
NCBI-ProteinID: ATD01727
Position
I:124018..125280
AA seq 420 aa
MTDKKFSDFAIAPEVVAGLTESGFEYCTPIQAKCLPFICEGRDIAGQAQTGTGKTLAFLT
ATCHRLLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQR
AQLEKGVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFRRMPD
TSERLNLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELFHPSQEDKIKLLL
TLIEEEWPEKAIVFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFSKGELD
FLVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTARAGASGHAISFACEQYAYNL
HEIEEYIEHSIPLSHYDKSALLDDLTKPTIHRKRNFSTGPRNRSNNNGRRPNNGYQKGRS
NT seq 1263 nt   +upstreamnt  +downstreamnt
ttgaccgataaaaagttttcagactttgctattgcaccggaagtggttgccgggttaacc
gaaagtgggtttgaatattgcacacccattcaagctaaatgcctaccgtttatttgtgaa
gggcgcgatattgcgggccaagcacaaacaggtacaggcaaaacgttggcgtttttaacc
gccacatgccatcggttattacaatctagcaaagcacctagtaaacatccaagagccctg
atcatggccccaactcgggagcttgcgattcagatacacaaagatgcaaaaattttagcg
ccgcactgtaatcttaacttaggtttagtatatggtggcgaagattacgaaaaacaacgt
gcacaactagaaaaaggcgttgatattttaattggtactacaggtcgcctaatagatctg
tacaagcaaggctgttacacccttaatgaaattgaggtagtcgtgctagatgaagccgat
cgtatgttcgatttaggctttattaaagatatccgttatatgttccgtcgtatgcccgat
acatcagagcgtttaaacttattattctctgccacactgtcgtatcgtgtacaagagctt
gcatttgaacacatgacaaacccagagcatgtgcaaatagaacccgatgtaaaaacgggt
aaacgtattcaagaagagctatttcatccttcacaagaagataaaattaagctgttgtta
accttgattgaagaagaatggcctgagaaagccattgtttttgcaaataccaaacacagc
tgtgaaactgtgtatgcatggttaaaagcagatggacatcgagtgggtatgctcaccggt
gatgtaaaccaaaagaaacgtcaatcaatactcgcgcaatttagtaaaggcgagctagac
tttttagtggctaccgatgttgctgcgcgtggtttacatattccagaagtaagtcatgta
tttaactttgacttacctgatgattgcgaagattacgttcaccgtattggtcgtacagct
cgtgcaggcgcttcgggtcatgcaattagctttgcgtgtgagcagtatgcttataacctt
catgaaattgaagagtacatcgagcacagcatccctttatcgcattacgataaaagtgca
ttgctagatgatttgaccaagccgactattcacagaaaacgtaatttttctaccggtcca
cgtaatcgtagtaataacaacggacgtcgcccaaataatggttaccaaaaaggacggtct
taa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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