KEGG   Pseudoalteromonas tetraodonis: PTET_a0590
Entry
PTET_a0590        CDS       T05282                                 
Symbol
vacB
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
ptd  Pseudoalteromonas tetraodonis
Pathway
ptd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ptd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PTET_a0590 (vacB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptd03019]
    PTET_a0590 (vacB)
   03016 Transfer RNA biogenesis [BR:ptd03016]
    PTET_a0590 (vacB)
Enzymes [BR:ptd01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     PTET_a0590 (vacB)
Messenger RNA biogenesis [BR:ptd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PTET_a0590 (vacB)
Transfer RNA biogenesis [BR:ptd03016]
 Prokaryotic type
  tRNA degradation factors
   PTET_a0590 (vacB)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 OB_Dis3
Other DBs
NCBI-ProteinID: ATD02134
Position
I:560843..563302
AA seq 819 aa
MSNQDPNLSREQEKYENPVPSREFILTHLQERSKPANYAQLCEELAVNDEERQIAFKRRL
RAMERDGQLYFNKFKCYALIDEAGLTKGKVVGHRDGFGFLEVEGESKDWFIAKHQMNMVL
HGDIVLAKGTKRGSGSKCDARIIKVLTNERAPIVGRYFVEHGIAVVVAEDPRITQDIIIL
PGNEKGARHNQMVQVQITQNPSRNMNAVGKVIDVLGEHLAPGMEIEVALRNHDIPHVWPE
EVEQQVAHLGEFVEEADKQGRVDLRGLPLVTIDGEDARDFDDAVYCEPKKSGGWRLWVAI
ADVSHYVGMNTPLNKEAIERGNSVYFPEQVIPMLPKVLSNGLCSLNPEVDRLCMVAEMTV
SQEGKLSGYKFYEAVMNSHARLTYTKVNAILQNDEKLRKEYAAVVPHLTDLQQMYMALKA
ARQERGAIEFETLETRFVFNAQRKIESIVPVIRNDAHKLIEECMILANVSAAKLLEKHEA
SALYRVHDEPDSEKLGNFTQFLTELGIESTLSDEPTPKEITHVLARLGDRPEAELIQTML
LRSMKQAVYQPDNIGHFGLALSAYAHFTSPIRRYPDLVVHRAIKAVLKAQGQQTSGEYAY
SDDEVDQLGEQCSTTERRADDATREVADWLKCEYMQDHVGMEFNGVISSVTNFGLFIRLD
DLQIDGLIHVTNLGDEYFQHDAAKHCLVGEHTHTVYRLGDKVTVQVASVSLDDRRINLTL
KGDVAQDRYARRRAPKKNAPTSVRSQLKAGKIPGKKSASDDKKPKASKKPAAKGKSASKS
KVKADDTTAKKKTKKKAVKKPKRPGKNARKRSSPGANNS
NT seq 2460 nt   +upstreamnt  +downstreamnt
atgtcaaaccaagatccaaatctcagtcgagaacaagaaaagtacgaaaacccagtccct
agtcgtgagtttatacttactcacctgcaagagcgttccaaacctgctaactacgcacaa
ctatgtgaagaactcgcagtcaacgatgaagaacgacaaatagcatttaagcgccgactt
cgcgccatggagcgtgatgggcagctttattttaataaatttaaatgttatgccctgatt
gacgaagccggtttaaccaaaggcaaagtagtcggtcacagagacggttttggcttttta
gaagttgaaggcgagagcaaagattggtttattgccaagcatcaaatgaatatggtgcta
cacggtgacatcgttcttgccaaaggcactaaacgcggctcaggctcaaaatgcgacgca
cgcatcatcaaagtactcactaacgagcgcgcacccattgtagggcgttattttgttgag
catggtattgccgttgttgtggctgaagatccgcgcattacccaagacattattattcta
ccgggtaacgaaaaaggcgcgcgtcataaccaaatggtgcaagtgcaaataacccaaaat
ccaagtcgtaatatgaatgcggtaggtaaagttatcgacgtactgggcgagcatttagcg
ccgggtatggaaattgaagttgcgctgcgtaatcacgatattccacacgtatggcctgaa
gaggttgaacaacaagttgcccacttaggtgaatttgttgaagaagccgataaacaaggt
cgagttgatttacgcggcttaccgcttgtgaccatagatggcgaagacgctcgtgatttt
gatgatgccgtatactgtgagcctaaaaagtcgggtggctggcgcttatgggtagccatt
gccgatgtatcacattatgtaggtatgaacacgccgcttaacaaagaagcgatagagcgc
ggtaactcagtgtatttccctgagcaagttattccaatgctaccaaaagtattatctaac
ggtttgtgctcgcttaaccctgaggttgatcgcttgtgtatggttgcagaaatgaccgta
tcgcaagagggtaagctctcaggttataagttttacgaagcggtgatgaactcacatgca
cgtttaacttacaccaaagtaaatgccattttacaaaacgatgaaaagttacgtaaagaa
tacgcagctgtagtgccgcatttaactgatttgcagcaaatgtacatggcattaaaagca
gcgcgccaagagcgtggcgccattgagtttgaaacactcgaaactcgctttgtatttaac
gcacagcgtaaaatagaatcaattgtgccggttattcgtaacgatgcgcacaagctcatt
gaagaatgtatgattttagccaatgtttcggcggctaagttacttgaaaaacacgaagcc
agcgcactgtatcgagtacatgatgagcccgatagcgaaaagctgggtaactttactcag
tttttaactgagctggggattgaaagcacgctaagtgatgaaccaaccccgaaagaaatt
actcatgtattggctcgtttaggtgaccgtccagaggctgagcttattcaaactatgctg
ctgcgctcaatgaaacaagcggtttatcagccagataacataggtcactttggtttagca
ttatcggcttacgcgcactttacctcgccaattcgccgttaccccgatttagtggtgcat
cgtgcaattaaagcagtattaaaagcacaagggcagcaaacctctggtgaatacgcttat
agcgatgatgaagtcgatcaacttggtgagcaatgttctaccactgagcgccgcgcagat
gatgccacccgtgaagtagccgattggttaaaatgtgaatacatgcaagatcatgtaggc
atggagtttaacggggttatttcatcggttactaactttggtttatttattcgtttagat
gacttacaaattgatggattaattcatgttaccaatttaggtgatgaatatttccagcat
gatgcagctaaacattgcttggtgggtgaacacacacatacggtttatcgtttaggcgac
aaagtcactgtgcaggttgcctcggtaagcttagatgatcgtcgtataaacttaacgctt
aaaggcgatgttgcccaagatcgttatgcgcgtcgtcgtgcacctaaaaaaaatgctcca
accagtgttcgctcgcaacttaaagccggtaaaatcccgggtaaaaagtcagcaagtgat
gacaaaaagccaaaggcgagtaaaaagcctgctgcaaaaggcaaatcagcgagcaaatca
aaagtaaaagcggatgacaccaccgctaagaaaaaaaccaaaaagaaagcggtcaaaaag
cctaaaagaccaggtaaaaatgcccgtaaacgtagtagcccaggagcaaacaattcgtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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