KEGG   Pyrenophora teres: PTT_08854
Entry
PTT_08854         CDS       T01613                                 
Name
(GenBank) hypothetical protein
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
pte  Pyrenophora teres
Pathway
pte03018  RNA degradation
pte03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pte00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PTT_08854
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PTT_08854
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pte03019]
    PTT_08854
   03041 Spliceosome [BR:pte03041]
    PTT_08854
Messenger RNA biogenesis [BR:pte03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PTT_08854
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PTT_08854
Spliceosome [BR:pte03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PTT_08854
 Complex C
  U2 snRNP components
    PTT_08854
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-ProteinID: EFQ93672
UniProt: E3RKR4
Position
Unknown
AA seq 96 aa
MEEKEETNEPLDLVRLCIDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYMAEEE
DDDQEPRVRTVKKQSEMLFVRGDSVVLIAPAEGTSQ
NT seq 291 nt   +upstreamnt  +downstreamnt
atggaagaaaaagaagaaaccaacgagcctctcgatcttgtgcgcctctgcattgacgaa
gttgtcattgtaaaattgcgcggcgaccgcgagctaaaaggaagactccatgcatacgac
tcgcactgcaacctcgttctcggagacgttgaagaaacgatatacatggccgaagaggaa
gacgacgaccaggagccccgtgtacggacagtcaagaagcagagtgagatgctgtttgtt
agaggcgattcagtagtcctcattgcaccggcagagggaacttcgcaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (18)   

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