KEGG   Pyrenophora teres: PTT_10466
Entry
PTT_10466         CDS       T01613                                 
Name
(GenBank) hypothetical protein
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
pte  Pyrenophora teres
Pathway
pte03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pte00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PTT_10466
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pte03019]
    PTT_10466
   03041 Spliceosome [BR:pte03041]
    PTT_10466
   03009 Ribosome biogenesis [BR:pte03009]
    PTT_10466
   03016 Transfer RNA biogenesis [BR:pte03016]
    PTT_10466
Enzymes [BR:pte01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     PTT_10466
Messenger RNA biogenesis [BR:pte03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     PTT_10466
Spliceosome [BR:pte03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    PTT_10466
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    PTT_10466
Ribosome biogenesis [BR:pte03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    PTT_10466
Transfer RNA biogenesis [BR:pte03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    PTT_10466
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C ResIII ATPase_2 eIF3_p135 nSTAND3 AAA_22 DUF5388 Helicase_dom4_arc
Other DBs
NCBI-ProteinID: EFQ92436
UniProt: E3RPB2
Position
Unknown
AA seq 1053 aa
MDDDMFDVFEGGPSAAPRKNKKRQANGDVKSPVPVEDSSMSDAPADHQQDGTNEAKKKQK
RDAEPEPIVTDAFETEQSREVAAAAGLQAQSQEGQAVVLSHQVRHQVALPPDYDYVPINE
HKPPQEPARTWPFTLDPFQQVSIASIQRNESVLVSAHTSAGKTVVAEYAIAQCLKNNQRV
IYTSPIKALSNQKYREFMAEFGDVGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMRE
VAWVVFDEVHYLRDKARGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKTHSQPCH
VVYTDFRPTPLQHYFFPAGAEGIHLVVDEKGVFREENFQKAMSSIADKAGTDSKDFLAKR
KGKGKDKKTNTGGNKDQTDIYKIVKMIMVKSYNPVIVFSFSKRECENYALAMSSLAFNDD
SEKAMVTKVFNSAIEMLSEEDRQLPQIQHILPLLRRGIGVHHSGLLPILKETIEILFQEG
LIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVAQRWVTPSEFIQMSGRAGRRGLDDRGI
VIMMINEQMEPAVAKEIVRGQQDNLNSAFHLGYNMILNLMRVEGISPEFMLERCFFQFQS
TAGVSHLEHQLEELEHEKANTNIVDEPPIKEYYNLRQQLDTHTKDMRDVIMQPTYCLQFL
QGGRLVKIKYKDFDFGWGAVVAFTPRKGNKGEIFPPHESYIVDVLLPVASDTKFAPAVND
GLPPGVRPPTAGDKGKMEVVPVVLNCIESIGHLRVFLPNELKSAEQRNNVRKALAEVKKR
FPDGIAILDPIENMNIKDDSFKKLLRRIEVLESRLLTNPLHNSPRLPELYSQYAQKIAIS
EKIKNVRKEIANALSVIQLDELKSRKRVLRRLGFIDEADVVQLKARVACEISTGDELVLS
ELLFNRFFNELTPEQCAACLSCFIFEEKTQEVPALKEELAKPYREIQQQARVIAKMSQES
KLTVNEEEYLKTFKYELMEVVYAWSKGATFAQICKMTDVYEGSLIRLFRRLEELLRQIAQ
AAKVMGSEELEQKFTASLELVRRDLVAAQSLYL
NT seq 3162 nt   +upstreamnt  +downstreamnt
atggacgacgacatgttcgacgtcttcgagggcggcccatccgccgctcccagaaagaac
aaaaagcgccaggcaaacggcgatgtcaaatctccagtgcccgttgaggattcctccatg
tcagacgcacctgcagatcatcagcaagatggtacgaatgaagcgaagaagaagcaaaag
cgcgatgcagagcccgagcctatagtcacggatgcgttcgagacggagcagtcgcgcgaa
gtcgctgcagctgcaggactacaggcgcagtcacaagaaggccaggcagtggtgctttca
catcaggtgcgccatcaggttgccctcccgcccgactacgattacgtccccatcaacgag
cacaagcctccacaggagcctgcccgcacctggcccttcaccctcgaccctttccagcag
gtctctatcgcgtccatacagcgtaatgagagtgttttggtctcggcgcatacctcagct
ggaaagacagtggtggcagaatacgccattgcgcaatgtctgaagaacaaccagcgagtc
atctacaccagtcctatcaaggcgctgagcaaccaaaagtaccgagagttcatggcagaa
tttggcgatgttggtctcatgacgggtgatgtcaccatcaacccgactgcgacatgtttg
gtcatgactactgagattttgcgctccatgttgtacagaggttctgagatcatgcgcgag
gtagcctgggtcgtattcgacgaggttcattacctgcgcgacaaggcgagaggtgtcgtg
tgggaggagaccatcatcttgctcccggacaaggtccgctacgtcttcctctctgccacc
attccgaacgccatgcagtttgcagaatggatcaccaaaacccacagccagccatgccac
gtcgtctacaccgatttccgcccgactccgctacaacattacttcttccccgccggcgca
gaaggaatacacttggtagtggatgagaagggtgtgttccgcgaagagaacttccaaaag
gctatgtcgtccatcgcagacaaggccggcaccgattccaaagacttcctggccaaacgc
aaaggaaagggcaaggacaagaaaaccaacacgggcggcaacaaggaccagacggatatt
tacaagattgtcaagatgatcatggtcaagagctacaacccagtcattgtcttcagcttc
agcaagagggaatgcgaaaactatgcgctcgccatgagctcgctcgcattcaacgacgac
tcggaaaaggccatggtgacaaaggtcttcaatagcgccatcgagatgttgtcagaggag
gaccgacagttgccccagatccagcacatcctgcccctgctccgaaggggtatcggtgtt
catcactctggactgctgcccattctaaaggagacgattgagatcttgttccaggagggt
ctgatcaaggtgctgtttgcaaccgaaaccttctctatcggactcaacatgccggcgaag
actgttgtgtttaccagtgtgcgcaagtttgacggagtagctcaacgatgggtgacacct
tccgagttcattcagatgtctggtcgtgctggccgtcgtggtctcgatgaccgtggtatt
gtcattatgatgatcaacgagcagatggagcctgctgtggccaaggagattgtgcgcgga
caacaggataacctgaattctgctttccatttgggctacaacatgatcctcaacctcatg
cgagtggagggcatttctcccgagttcatgttggagaggtgcttcttccagttccaaagc
acagctggtgtctctcatctggaacaccaactagaggagctcgagcacgaaaaagcaaac
acgaacatcgtcgatgagccgcctatcaaggagtactacaacctgcgacaacaactcgac
acccataccaaggacatgcgcgatgtcatcatgcagccgacgtactgtttgcaatttctg
cagggtggccgactggtcaagattaaatacaaggactttgactttggctggggcgcggta
gtagcgttcacacctcgcaaaggaaacaagggcgaaatttttccgcctcacgagtcttac
atagtcgatgttctactgccggttgcgagtgacaccaagtttgcgccagcagtgaatgac
ggattgccccctggcgtccggccaccaacggctggcgacaagggtaagatggaggttgtt
ccggtggtgctaaactgcatcgaatcgattggccatctccgtgtatttttgccaaacgag
ctcaagtcagcggagcaaaggaacaatgttcgcaaggcgctggctgaggtcaagaaacgt
ttcccggacggaatcgccattctggatcccatcgagaacatgaatatcaaggacgacagc
ttcaagaagcttctcaggaggatcgaagtgttagaatctcgactgctcacaaaccctctc
cacaactcgccgaggttacctgagctatacagccaatacgcacagaagattgcaattagc
gaaaagatcaagaacgttcggaaagagattgcgaatgcgttgtcggtcatccaactggac
gagctgaagagcaggaaacgtgtgttgcgacgacttggcttcatcgacgaggccgatgtg
gtgcagctaaaggccagggttgcttgtgaaatcagcacgggtgatgagcttgtcctgagc
gagctacttttcaatcgtttcttcaatgaactgacacccgagcagtgcgcggcctgtctc
agctgtttcatcttcgaagaaaagacgcaggaagtgccggcgctcaaagaagagcttgcc
aagccttaccgcgagatccagcagcaagccagagttatcgcaaaaatgtcgcaggagagc
aagctgacggtcaacgaagaagagtacctcaagacgttcaagtacgagctgatggaagtc
gtctacgcatggtccaagggtgctacatttgcccagatctgcaaaatgacggacgtatac
gagggcagtcttattcgcctctttcggcgactagaggagcttctccggcaaattgcgcaa
gcggccaaagtcatgggcagcgaagagctcgagcagaagttcacggcatcacttgagctt
gtgcgcagggatctggtggccgcccagtccctgtacctctaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (44)   

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