KEGG   Panthera tigris altaica (Amur tiger): 102970689
Entry
102970689         CDS       T02988                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
ptg  Panthera tigris altaica (Amur tiger)
Pathway
ptg03018  RNA degradation
ptg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102970689
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102970689
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptg03019]
    102970689
   03041 Spliceosome [BR:ptg03041]
    102970689
Messenger RNA biogenesis [BR:ptg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102970689
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     102970689
Spliceosome [BR:ptg03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    102970689
 Complex C
  U2 snRNP components
    102970689
SSDB
Motif
Pfam: LSM TIG_SUH vATP-synt_E DUF150_C
Other DBs
NCBI-GeneID: 102970689
NCBI-ProteinID: XP_015400619
UniProt: A0A8C9JWT0
Position
Un
AA seq 102 aa
MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq 309 nt   +upstreamnt  +downstreamnt
atggcggacgacgtggaccagcaacaaaccaccaacaccgtagaggagcccctggatctc
atcaggctcagcctagacgagcgaatttatgtgaaaatgaggaatgacagagagcttcga
ggcagattacatgcttatgatcagcatttaaatatgatattgggagatgtggaagagact
gtgactaccatagaaattgatgaggaaacctatgaggagatatataaatcaacaaaacgg
aatattccgatgctctttgtccggggagatggtgttgttctagttgcccctccattaaga
gttggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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