KEGG   Phaeodactylum tricornutum: PHATRDRAFT_14457
Entry
PHATRDRAFT_14457  CDS       T01075                                 
Symbol
RPA1
Name
(RefSeq) replication protein a large 70 kD subunit
  KO
K07466  replication factor A1
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03030  DNA replication
pti03420  Nucleotide excision repair
pti03430  Mismatch repair
pti03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PHATRDRAFT_14457 (RPA1)
   03420 Nucleotide excision repair
    PHATRDRAFT_14457 (RPA1)
   03430 Mismatch repair
    PHATRDRAFT_14457 (RPA1)
   03440 Homologous recombination
    PHATRDRAFT_14457 (RPA1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pti03000]
    PHATRDRAFT_14457 (RPA1)
   03032 DNA replication proteins [BR:pti03032]
    PHATRDRAFT_14457 (RPA1)
   03400 DNA repair and recombination proteins [BR:pti03400]
    PHATRDRAFT_14457 (RPA1)
Transcription factors [BR:pti03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    PHATRDRAFT_14457 (RPA1)
DNA replication proteins [BR:pti03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    PHATRDRAFT_14457 (RPA1)
DNA repair and recombination proteins [BR:pti03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     PHATRDRAFT_14457 (RPA1)
   MMR (mismatch excision repair)
     PHATRDRAFT_14457 (RPA1)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     PHATRDRAFT_14457 (RPA1)
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N tRNA_anti-codon DUF5633 PHD_2
Other DBs
NCBI-GeneID: 7203231
NCBI-ProteinID: XP_002182265
JGI: 14457
UniProt: B7G5L2
Position
15:631178..633225
AA seq 606 aa
MTGNGGGPSFSPILQVLDTKQVPGPQGSVRYRIVLSDGKHYIQGMLATQLNHMIATNLIG
ANTIVQVEQFMSNRVKDRTVIILLNVHALRNEPSRIGDPQDIEKAQIATPGTNYATGSSV
PPVKTGSPNPYGGPSRNPHHASPVRSSHAPIVRDTVNGTPITNISNLNMYANKWTIQARV
TSKSDIRTWSNAKGEGSLFSVELLDQTQDVRATFFKEAVDKFYSFLQIGSVYTFSGGRLK
VANAQYNTCQSNFEITFDQNSEIHLANDDGNIQRQHYEFIDSIAGLERTEPNTMVDLLAV
VQAVGEVATIVSKKSGQELTKCDLTLIDTSATQITLTLWGDKAASALTDYNQQPVVAIRR
ARVSDYGGRSLSLSGSIETNPDIPQTAPLQTWWRTQTANGGVTGKSLSATRGGAGVMESL
EQRQTIADIKNNNLGYAGDKPDWLTFKATVSFLKKDKEGGSWYPACANAGEPCKNRYKVT
QTTDGNWYCDKCQGSFPTCVRRWIFSGVVEDDTSSTWVSFFNEQAETLLAGATADQVYAE
TYQDQQDQDAYDSYFAKANHTEWIFKCKVKNEMVNEESRVKTSVVAMQPVDFAKESRDLL
SALAKF
NT seq 1821 nt   +upstreamnt  +downstreamnt
atgacgggcaacggcggaggaccttccttcagtcccatcctccaagtcctcgataccaag
caagttccgggaccccaaggaagtgtgcgctatcggattgtcctgtccgacggcaagcac
tacattcaaggcatgctcgcgacccaactgaaccacatgattgctactaatctcattggt
gccaacacgatagtgcaagtcgagcaattcatgtccaatcgcgtcaaggaccgcaccgtc
attattctcctcaacgtgcacgccctccgcaacgaaccctcccgcattggggacccgcag
gacattgaaaaggcgcaaattgcaaccccgggaaccaattacgccaccggaagctccgtc
ccacccgtcaagaccgggagtcccaatccctacggaggtccttcccgaaacccacaccac
gcttcccccgtgcggtcctcccacgcaccgattgtacgcgataccgtgaacggaacaccc
atcaccaacattagcaatctcaacatgtacgccaacaagtggaccattcaagcccgcgtt
acttccaaatcagatattcgcacctggtccaacgccaaaggcgaaggtagcctcttttcc
gtcgaactactcgatcaaacgcaggatgtccgggctaccttcttcaaggaagccgtcgac
aagttctacagctttttgcagatcggatccgtctacacattttccggtggacgtctcaag
gtcgccaacgcacagtacaatacctgccagagcaatttcgaaatcacttttgatcagaac
tccgaaatacacctcgccaacgacgacggaaatatacaacggcagcactacgaattcatc
gacagcatcgccggtctggagcgtaccgaacccaacaccatggtggatctgctcgccgtc
gtacaggcggtcggagaagtcgccacgattgtcagcaaaaagtcgggccaggagctcacc
aagtgcgatttgaccctcatcgacacctccgccacgcaaatcaccctcactctctgggga
gacaaggctgcctcggcactcaccgactacaaccaacaacccgtcgtcgcgatccggcgc
gcacgcgtcagcgactacggcggacgtagtctctccctctccggatccatcgaaaccaat
ccggacattccccaaaccgcgcccttgcaaacgtggtggcggacccaaaccgccaacggc
ggtgtcaccgggaaatctctatccgccacccgcggcggagccggcgtgatggaaagtttg
gaacaacgacaaaccattgccgacatcaagaataacaatctgggttacgccggcgacaag
cccgattggctgacgttcaaggccaccgtttcctttttgaaaaaagacaaggaggggggt
tcgtggtacccagcctgtgccaacgccggggaaccctgcaaaaaccggtacaaggtcacg
caaacgaccgacggcaactggtactgcgacaagtgtcaaggctcgtttcccacctgcgtc
cggcgctggatcttttccggggtcgtcgaagacgacaccagctctacctgggtcagtttc
ttcaacgaacaggccgaaacactgctcgccggcgccacggccgaccaagtctacgccgag
acctatcaggatcagcaagatcaggacgcctacgactcgtactttgccaaggccaaccac
acggaatggatcttcaaatgcaaggtcaagaacgaaatggtcaacgaagaatcccgcgtc
aaaaccagcgtcgtggccatgcaacccgtcgactttgccaaggaatcccgcgatctcctg
tcggccctggccaagttttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (149)   
   KEGG ORTHOLOGY (1)   
   RefGene (144)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (167)   

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