KEGG   Phaeodactylum tricornutum: PHATRDRAFT_47345
Entry
PHATRDRAFT_47345  CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K06173  tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Organism
pti  Phaeodactylum tricornutum
Brite
KEGG Orthology (KO) [BR:pti00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pti03016]
    PHATRDRAFT_47345
Enzymes [BR:pti01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.12  tRNA pseudouridine38-40 synthase
     PHATRDRAFT_47345
Transfer RNA biogenesis [BR:pti03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    PHATRDRAFT_47345
 Prokaryotic type
    PHATRDRAFT_47345
SSDB
Motif
Pfam: PseudoU_synth_1
Other DBs
NCBI-GeneID: 7202504
NCBI-ProteinID: XP_002181709
JGI: 47345
UniProt: B7G314
Position
13:complement(355125..356569)
AA seq 421 aa
MVGHETTAWLLTLFGGACASLACPGITALALPPVAANPNFQRNAALRTVAWGADEVTPVA
VNFTEQPLTSALLHVSYDGRQFYGWSSGNDPKDRESNAARPRYSTRSRRRRRNRGNYDGT
VRSVQGEIQYCLSKVYGNIDPQRVVVEGCSRTDKGVHARGMMAQIYCLHETTSPNDDPVV
DWSIPGKRQPHPRNATDTSYFTQLPMNLTKLAFTLNRMLPHDISIMGIAPTPHPHVTGCN
PAISALPFHPTLSCRHKTYRYVVSVGTRADPTKRLYVWHLDRAISTFSLDQAEQACQILQ
GSHNFAAFQGAPRGSDNKIKFTMRNTTCQLISIRIQHQSTWLDTETYVVSVTGDRFLYKM
IRFLVGTVVGVGTGKLTLDNVAAMLLTQSRNNLQVECAPPHALVLEHVEYDAAIDWQPVR
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggtcgggcacgagacgactgcttggctgctgactctcttcggcggtgcgtgtgcatcg
ttggcctgtccaggtatcactgccttggcgctcccgccggtagccgcaaacccgaacttc
caacggaatgcagcgttacgcacggtagcttggggcgcggacgaagtaactcctgtggcc
gtgaacttcacggaacaacccttgacgtccgcactcctccatgttagttacgacggccgg
caattttatggatggagttcgggcaacgatccgaaagatcgtgagtcgaatgccgccagg
cctcgctactcgaccaggtctcgacgccgccgacggaatcgtggcaactacgatggtacg
gtacgatccgtacagggagaaatccagtactgtctatccaaggtgtacggcaacattgat
ccccaacgagtcgtcgtggagggctgcagccgtaccgacaagggcgtgcacgcccgcggt
atgatggcgcaaatctactgtctacacgaaactacctcgccgaatgatgatcccgtagtg
gattggtccatcccgggaaagcgacaacctcacccgcgcaacgctacggatacgtcctac
tttacgcagctccccatgaacctgacaaaattggcctttacgctgaaccgtatgttgcca
cacgacatttctattatggggattgccccaacgcctcacccccacgttaccggatgtaat
cctgcgatcagtgctctgccctttcacccgacgttgtcttgtcgccacaagacctaccgg
tacgtcgtttccgtaggcacacgcgcggatcccacaaagcgtctctatgtgtggcatcta
gatcgagcaatttctaccttttctctcgaccaagccgagcaagcctgccaaatactgcaa
gggtcgcacaattttgctgcctttcaaggtgcaccgcgaggctcggacaacaagatcaag
tttacaatgagaaatacgacttgtcagctcattagcattcgtatacaacaccagagtact
tggttggatactgaaacgtacgtggtgtccgtcaccggagaccgattcctctacaaaatg
atccggtttttggtaggcactgtggttggcgtgggcactggtaaactgactctggacaac
gtcgcagcaatgcttctcacgcagtcgcggaacaatttgcaagtggagtgcgcgccgccg
cacgctcttgttttggaacacgtcgagtacgacgcagcaatcgactggcaaccggttcgt
agttga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (39)   

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