KEGG   Phaeodactylum tricornutum: PHATRDRAFT_54015
Entry
PHATRDRAFT_54015  CDS       T01075                                 
Symbol
SHMT2
Name
(RefSeq) serine hydroxymethyltransferase
  KO
K00600  glycine hydroxymethyltransferase [EC:2.1.2.1]
Organism
pti  Phaeodactylum tricornutum
Pathway
pti00260  Glycine, serine and threonine metabolism
pti00460  Cyanoamino acid metabolism
pti00630  Glyoxylate and dicarboxylate metabolism
pti00670  One carbon pool by folate
pti01100  Metabolic pathways
pti01110  Biosynthesis of secondary metabolites
pti01200  Carbon metabolism
pti01230  Biosynthesis of amino acids
pti01240  Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:pti00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00630 Glyoxylate and dicarboxylate metabolism
    PHATRDRAFT_54015 (SHMT2)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    PHATRDRAFT_54015 (SHMT2)
  09106 Metabolism of other amino acids
   00460 Cyanoamino acid metabolism
    PHATRDRAFT_54015 (SHMT2)
  09108 Metabolism of cofactors and vitamins
   00670 One carbon pool by folate
    PHATRDRAFT_54015 (SHMT2)
Enzymes [BR:pti01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.2  Hydroxymethyl-, formyl- and related transferases
    2.1.2.1  glycine hydroxymethyltransferase
     PHATRDRAFT_54015 (SHMT2)
SSDB
Motif
Pfam: SHMT
Other DBs
NCBI-GeneID: 7196206
NCBI-ProteinID: XP_002177340
JGI: 54015
UniProt: B7FQ66
Position
1:complement(1659736..1661562)
AA seq 501 aa
MLSVRSTLAPAIRRIATRTFAAGADLNKTLLETDPELSQLIEQEKARQRNSLVLIASENF
TSKAVLDALGSVLSNKYSEGYPGARYYGGNENIDQVELLCQKRALEAFHLDPAEWGVNVQ
SLSGSPANFQVYTALLETHARILALDLPHGGHLSHGYQTATKKISMVSRYFESMPYRLDE
STGTIDYDQMEKSADLFRPKMIVAGASAYSRLIDYERIRKIADGVGAYVMSDMAHISGLV
AAQVIPSCFEYSDVVTTTTHKSLRGPRGAMIFYRKGQKGTDKKGNPIMYDLEEKINFTVF
PGLQGGPHNHTIGALATCLKQAATADFVVYQKQVLKNSSRLAEELNKLGYTLVSGGTDNH
LVLIDVKSSAKIDGARVERILELACIATNKNTVPGDTSALMPGGIRMGTPALTSRGFKED
DFTKVAHFFDRAVKIAVKLKNTDQGAKLKGFREMCAVGPSVDADLVQLRHDVSEFACLFP
TVGFNEDEMTFEGEYNVDFVA
NT seq 1506 nt   +upstreamnt  +downstreamnt
atgttaagtgttcgatcaacactcgctcctgctatccgccgaatcgcgacccgtacattc
gcggcgggtgccgacctcaacaaaacgttgttggaaactgacccggaactcagtcagttg
atcgagcaggaaaaggctcgtcaacgcaacagtctcgtgttgatcgccagcgagaatttt
acttcgaaggcggtattggatgctcttggctctgtcctttctaataagtacagtgaggga
tatccaggagcccgatactacggaggtaacgagaacattgatcaagtcgagctgctctgt
caaaaacgtgctttggaggcctttcatcttgaccccgctgaatggggtgtcaacgttcag
tccctctcaggttcaccggcaaactttcaggtttacactgcgttgctcgaaacacatgct
cgcatattagccttggaccttccgcatggaggccatctttctcatggataccaaactgcc
acgaagaagatttctatggtgtcacggtactttgagtcaatgccataccgtctcgatgaa
tccactggaaccattgactacgatcagatggaaaagagtgccgatctctttcgtcccaag
atgattgttgctggcgcttcggcatattctcgattaattgattatgaacgcattcgcaag
atcgctgacggtgtgggtgcctatgtcatgtccgatatggcgcacatttctgggttggtc
gccgcgcaggtcattccttcctgcttcgaatattccgatgtggtgactacgacaacgcac
aagagtttgcgtggaccacggggcgccatgattttttaccgcaagggccagaaaggtacc
gacaagaaggggaacccgattatgtatgacttggaggagaagatcaattttaccgtattt
cctggtttgcagggcggccctcataaccacacgatcggcgcgctggctacatgcctcaaa
caagctgccaccgctgactttgttgtctaccaaaagcaagtattgaagaactcgtctcgc
ctggccgaggaactcaacaaattgggatacaccttggtgagtgggggaacagataatcac
ttggtcttgattgatgttaagtcttccgctaagattgacggagcccgtgtcgagcgcatt
ttggagctggcttgtattgcgacgaacaaaaacaccgtgccgggtgacacctcggcgttg
atgcctggcggtattcgaatgggaacgccagcgttgacgtctcgtggtttcaaggaagat
gactttaccaaggtagcccacttttttgaccgcgctgtcaagattgccgtcaagcttaag
aatacggaccagggggcaaagctcaagggatttcgtgagatgtgtgccgttggtccctcg
gttgacgctgatttggttcagcttcgtcatgatgtttccgaatttgcttgcttatttccc
acagtgggattcaatgaggatgagatgacatttgaaggcgaatacaatgttgactttgtt
gcttag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (14)   
   KEGG PATHWAY (9)   
   KEGG MODULE (5)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (211)   
   KEGG ORTHOLOGY (1)   
   RefGene (206)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (242)   

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