KEGG   Phaeodactylum tricornutum: PHATR_44042
Entry
PHATR_44042       CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K14570  RNA exonuclease [EC:3.1.-.-]
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    PHATR_44042
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pti03009]
    PHATR_44042
Ribosome biogenesis [BR:pti03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    PHATR_44042
SSDB
Motif
Pfam: RNase_T zf-CCCH_4 zf-CCCH zf-CCCH_2 zf_CCCH_4 Torus MIX23
Other DBs
NCBI-GeneID: 7204227
NCBI-ProteinID: XP_002186127
JGI: 44042
UniProt: B5Y560
Position
3:777258..779079
AA seq 578 aa
MPTAKKYKLFAADGADGGVPPCAFFASPAGCRNGASCKFAHVRPTEAAVETGSVVSSESD
DEPMPSPSVPIPTTNNKQKSAKTKAKTTQQASPQPQTKQAKKVQIQMDTAPTDDSPFRQS
PPKPKKNRRSQKEEDLGPFANPKKKVKSDESPGGHKTAAQEPTPPPTTNSPKPKQQPAKT
AVAGFDIRALNLPVASFTMPGTAPAPTAPPQPPAPVADAVSNVQEILPTHTTTGAKWMKA
IQQARQHHKYATAYDFVKYKALDAEIGLDPSSTWIQAKPYGEWCKGFPQAIAIDCEMCET
EDPVSGKHNAKDLCRVSIVNAENDEVLLDSLVKPSWPVVDYRSRINGITEEHLKGVQFTL
RHTQAFLMALCSQETVILGHALHNDLAAMRMEHYCNADSANLFSASDSERSSVSLKDLAS
NVLKKTMPDKHDSVNDARTAWKVLEHWVEKDGQVEPIVRSMSVKQTFASQLFIHRIPKNM
CEESHLSRMFLAHTSIAPTEVEEIEFAGEMGKTHVVFKSPQHANLAFDTLDSKTDTDPSG
RLQKKVFLRNGGYIRVRKMAFEKPRDKSPPRRALTTSD
NT seq 1737 nt   +upstreamnt  +downstreamnt
atgccaacagcgaaaaagtacaagctctttgcggcggacggggcggacggcggggtgcct
ccgtgtgcctttttcgcgtcgccggcgggttgtcgcaacggagcatcgtgcaagtttgcg
cacgtacggcccacggaagccgcggtcgaaacgggttccgtcgtcagttccgaaagtgac
gacgaaccaatgccctcgccctcggtaccgatccccaccaccaacaacaagcaaaagtca
gccaaaaccaaagccaaaacaacccagcaagcgtcgccccaaccacaaaccaaacaggcc
aaaaaggtccagatccagatggataccgccccaaccgacgattcccccttccggcaaagt
ccgcccaaacccaaaaaaaatcgtcgctcccagaaagaagaggacctcggtccgttcgcc
aatcccaagaaaaaggtcaaatcggacgaatcgccgggaggccacaaaaccgctgcccaa
gaaccgacgcccccacccaccaccaattccccaaagccgaagcagcagcccgccaaaacg
gcggttgctggctttgacattcgggctttgaacttgcccgtcgcctcctttaccatgcct
ggaaccgcaccggctccaaccgcaccccctcaaccccccgctcccgtcgccgatgcggta
tccaacgtccaggagattctcccgacgcacaccactacgggcgccaaatggatgaaggcc
attcaacaggcccgccagcatcacaagtacgcgaccgcgtacgatttcgtaaaatacaag
gctttggatgccgagattggattggatcccagcagcacttggattcaagcgaaaccgtac
ggcgagtggtgcaaaggatttccccaagctattgctattgattgtgaaatgtgcgaaacg
gaagacccggtttccggcaaacataacgccaaggatttatgtcgtgtctccatcgtcaat
gcagaaaacgacgaagttctgctggacagtctggtgaagccatcctggccggtggttgac
taccgctcccgtattaacggcattactgaagagcacttgaaaggcgtgcaatttactctg
cgtcacacccaggcatttctgatggctctttgtagtcaggaaacggtcattcttggacac
gccctgcacaacgatctagccgcgatgcgcatggagcactattgcaacgctgattcggcc
aatttattttccgcatccgacagcgaacgatccagcgtcagcctgaaagacttggcttcc
aacgttctgaaaaagaccatgcccgacaagcacgactcggtgaacgacgctagaaccgca
tggaaagtcttggaacactgggtcgaaaaggacggccaagtcgaacccattgtccgctct
atgtccgtgaagcagacctttgcctcccagcttttcattcaccgtattccgaaaaatatg
tgcgaagagtcccacttgtcgcgtatgttcttggctcatacgagtattgcgccgacggaa
gtggaagagattgagtttgcgggtgaaatgggcaaaacccacgtcgttttcaagtccccg
caacacgccaacttggcgttcgatacgctcgatagcaaaaccgatacagatccgtcggga
cgcctccagaagaaagtttttctccgaaatggcggctacattcgcgtccgcaaaatggcc
tttgagaaaccccgagacaagagtccgccccgtcgtgctttgacgacgtcggactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (94)   
   KEGG ORTHOLOGY (1)   
   RefGene (89)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (108)   

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