KEGG   Pan troglodytes (chimpanzee): 471696
Entry
471696            CDS       T01005                                 
Symbol
TCOF1
Name
(RefSeq) treacle protein isoform X1
  KO
K14562  Treacher Collins syndrome protein
Organism
ptr  Pan troglodytes (chimpanzee)
Pathway
ptr03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:ptr00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    471696 (TCOF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ptr03009]
    471696 (TCOF1)
Ribosome biogenesis [BR:ptr03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    471696 (TCOF1)
SSDB
Motif
Pfam: Treacle Gal-3-0_sulfotr
Other DBs
NCBI-GeneID: 471696
NCBI-ProteinID: XP_016809529
Ensembl: ENSPTRG00000017416
VGNC: 13606
UniProt: A0A2I3RVL9
Position
5:128537446..128579764
AA seq 1525 aa
MAEARKRRELLPLIYHHLLRAGYVRAAREVKEQSGQKCFLAQPVTLLDIYTHWQQTSELG
RKRKAEEDAALQAKKTRVSDPISTSESSEEEEEAEAETAKATPRLASTNSSVLGADLPSS
MKEKAKAETEKAGKTGNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVL
AFGAAAKPGMVSAGQADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAP
APGKVGDVTPQVKGGALPPAKKAKKPEEESESSEEGSESEEEAPAGTRSQVKASEKILQV
RAASAPAKGTPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALL
QAKASGKTSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSE
EEAPAQAKPSGKAPQVRAASAPAKESPRKGTAPAPPRKTGPAAAQVQVGKQEEDSGSSSE
ESDSDREALAAMNAAQVKPLGKSPQVKPASTMGMGPLGKGAGPVPPGKVGPATPSAQVGK
WEEDSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAKPASSPAKGPPQKAGPVAVQVK
AEKPMDNSESSEESSDSADSEEAPAVMTAAQAKPALKIPQTKACPKKTNTTASAKVAPVR
VGTQAPRKAGTATSPAGSSPAVAGGTQRPAEDSSSSEESDSEEEKTGLAVTVGQAKSVGK
GLQVKAASVPLKGSLGQGTAPVLPGKTGPTVTQVKAEKQEDSESSEEESDSEEAAASPAQ
VKTSVKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQVKQRSPSKVKPPVRNPQNSTVL
ARGPASVPSVGKAVATAARAQTGPEEDSGSSEEESDSEEEVETLAQAKPSGKTPQIRAAL
APAKESPRKGAAPTPPGKTGPSAAQAGKQDDSGSSSEESDSDGEAPAAVTSAQKDSNSKP
ARSKTLAPAPPERNTEGSSESSEEELPLTQVIKPPLIFVDPNRSPAGPAATPAQAQAAST
PRKARASESTARSSSSESEDEDVIPATQCLTPGIRTNVVTMPTAHPRIAPKASMAGASSS
KESSRISDGKKQEGPATQVSKKNPASLPLTQATLKVLAQKASEAQPPVARTQPSSGVDSA
VGTLPATSPQSSSVQAKGTNKLRKPKLPEVQQATKAPESSDDSEDSSDSSSGSEEDAEGP
QGAKSAHTLGPTPSRTETLVEETAAESSEDDVVAPSQSLLSGYMTPGLTPANSQASKATP
KLDSSPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPKTGGKEAASGTTPQKSRKPKKGAGN
PQASTLALQSNIAQCLLGQPWPLNEAQVQASVVKVLTELLEQERKKVVDTTKESSRKGWE
SRKRKLSGDQLAARTPRSKKKKKLGAREGGEASVSPEKTSTTSKGKAKRDKASGDVKEKK
GKGSLGSQGAKDEPEEELQKGMGKVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKAKK
ASTKDSESPSQKKKKKKKKTAEQTV
NT seq 4578 nt   +upstreamnt  +downstreamnt
atggccgaggccaggaagcggcgggagctacttcccctgatctaccaccatctgctgcgg
gctggctatgtgcgtgcggcgcgggaagtgaaggagcagagcggccagaagtgtttcctg
gctcagcccgtaacccttctggacatctatacacactggcaacaaacctcagagcttggt
cggaagcggaaggcagaggaagatgcggcactgcaagctaagaaaacccgtgtgtcagac
cccatcagcacctcagagagctcggaagaggaggaggaagcagaagccgaaaccgccaaa
gccaccccaagactagcatctaccaactcctcagtcctgggggcggacttgccatcaagc
atgaaagaaaaagccaaggcagagacagagaaagctggcaagactgggaattccatgcca
caccctgccactgggaagacggtggccaaccttctttctgggaagtctcccaggaagtca
gcagagccctcagcgaatactacgttggtctcagaaactgaggaggagggcagcgtcttg
gcctttggagctgctgccaagcctgggatggtgtcagcgggccaggccgacagctccagt
gaggacacctccagctccagcgatgagacagacgtggaggggaaaccctcagtaaaacca
gcccaggtcaaagcctcatcagtttctactaaggagtctccagcaagaaaggcggcccca
gcccctgggaaggtgggggatgtgacaccccaggtcaaaggaggggccctgccgccagcc
aagaaggccaagaagccagaagaggagtcagagagtagtgaggagggatctgaaagtgag
gaggaggcccctgcagggacacgaagccaggtaaaggcctctgaaaaaattctccaggtc
agagctgcctcggcccctgccaaggggacccctgggaaaggggctaccccagcaccccct
gggaaggcaggagctgtagcctcccagaccaaggcagggaagccagaggaggactcagag
agcagcagtgaggagtcgtctgacagtgaggaggagacgccagctgccaaggccctgctt
caggcgaaggcctcaggaaaaacctctcaggtcggagctgcctcagcccctgccaaggag
tcccccaggaaaggagctgccccagcgccccctgggaagacagggcctgcagttgccaag
gcccaggcggggaagcgggaggaggactcgcagagcagcagtgaggaatcggacagtgag
gaggaggcgcctgctcaggcgaagccttcagggaaggccccccaagtcagagccgcctcg
gcccctgccaaggagtcccccaggaaagggactgccccagcacctcctaggaaaacaggg
cctgcagccgcccaggtccaggtggggaagcaggaggaggactcaggaagcagcagcgag
gagtcagacagtgacagagaggcactggcagccatgaatgcagctcaggtgaagcccttg
gggaaaagcccccaggtgaaacctgcctccaccatgggcatggggcccttggggaaaggc
gccggcccagtgccacctgggaaggtggggcctgcaaccccctcggcccaggtggggaag
tgggaggaggactcagagagcagtagtgaggagtcatcagacagcagtgatggagaggtg
cccacagctgtggccccggctcaggaaaagtccttggggaacatcctccaggccaaacct
gcctccagtcctgccaaggggccccctcagaaggcagggcctgtagccgtccaggtcaag
gctgaaaagcccatggacaactcggagagcagcgaggagtcgtcggacagtgcggacagt
gaggaggcaccagcagtcatgactgcagctcaggcaaaaccagctctgaaaattcctcag
accaaggcctgcccaaagaaaaccaataccactgcatctgccaaggtcgcccctgtgcga
gtgggcacccaagccccccggaaagcaggaactgcgacttctccagcaggctcatcccca
gctgtggctgggggcacccagagaccagcagaggattcttcaagcagtgaggaatcagat
agtgaggaagagaagacaggtcttgcagtaaccgtgggacaggcaaagtctgtggggaaa
ggcctccaggtgaaagcggcctcagtgcctctcaaggggtccttggggcaagggactgct
ccagtactccctgggaagacggggcctacagtcacccaggtgaaagctgaaaagcaggaa
gactctgagagcagtgaggaggagtcagacagtgaggaggcagctgcatctccagcacag
gtgaaaacctcagtaaagaaaacccaggccaaagccaacccagctgccgccagagcacct
tcagcaaaagggacaatttcagcccctggaaaagttgtcactgcagctgctcaagtcaaa
cagagatctccatccaaggtgaagccaccagtgagaaacccccagaacagtaccgtcttg
gcgaggggcccagcatctgtgccatctgtggggaaggccgtggctacagcagctcgggcc
cagacagggccagaggaggactcagggagcagtgaggaggagtcagacagtgaggaggag
gtggagacgctggctcaggcgaagccttcagggaagaccccccagatcagagctgccttg
gctcctgccaaggagtcccccaggaaaggggctgccccaacacctcctgggaagacaggg
ccttcggctgcccaggcagggaagcaggatgactcagggagcagcagcgaggaatcagac
agtgatggggaagcaccggcagctgtgacctctgcccagaaggacagtaactccaaacct
gccagaagcaagaccctggccccagcacccccagagaggaacacggaggggtcctcggag
agcagtgaggaagagctgccactgacccaggtgattaaaccccctctgatttttgtcgac
cctaatcgtagtccagctggcccagctgctacacccgcacaagcccaggctgcaagcacc
ccgaggaaggcccgagcctcggagagcacagccaggagctcctcctccgagagcgaggat
gaggacgtgatccccgctacacagtgcttgactcctggcatcagaaccaatgtggtgacc
atgcccactgcccacccaagaatagcccccaaagccagcatggctggggccagcagcagc
aaggagtccagtcggatatcagatggcaagaaacaggagggaccagccactcaggtgtca
aagaagaacccagcttccctcccactgacccaggctaccctgaaggtcctcgcccagaaa
gccagtgaggctcagcctcctgttgccaggacccagccttcaagtggggttgacagtgct
gtgggaacactccctgcaacaagtccccagagcagctccgtccaggccaaagggaccaac
aagctcagaaaacctaagcttcctgaggtccagcaggccaccaaagcccctgagagctca
gatgacagtgaggacagcagcgacagttcttcagggagtgaggaagatgctgaagggccc
cagggggccaagtcggcccacacgctgggtcccaccccctccaggacagagaccctggtg
gaggagaccgcagcagagtccagcgaggatgatgtggtggcgccatcccagtctctcctc
tcaggttatatgacccctggactaaccccagccaattcccaggcctcaaaagccactccc
aagctagactccagcccctcagtttcctctactctggccgccaaagatgacccagatggc
aagcaggaggcaaagccccaacaggcagcaggcatgttgtcccctaaaacaggtggaaaa
gaggctgcttcaggcaccacacctcagaagtcccggaagcccaagaaaggggctgggaac
ccccaagcctcaaccctggcgctgcaaagcaacatcgcccagtgcctcctgggccaaccc
tggcccctgaatgaggcccaggtgcaggcctcagtggtgaaggtcctgactgagctgctg
gaacaggaaagaaagaaggtggtggacaccaccaaggagagcagcaggaagggctgggag
agccgcaagcgcaagctatcgggagaccagctggctgccaggacccccaggagcaagaag
aagaagaagctgggggccagggaaggtggggaggcctctgtttccccagaaaagacctcc
acgacttccaaggggaaagcaaagagagacaaagcgagtggtgatgtcaaggagaagaaa
gggaaggggtctcttggctcccaaggggccaaggacgagccagaagaggagcttcagaag
gggatggggaaggttgaaggtggagatcaaagcaacccaaagagcaagaaggagaagaag
aaatccgacaagagaaaaaaagacaaagaaaaaaaagaaaagaagaagaaagcaaaaaag
gcctcaaccaaagattctgagtcaccgtcccagaagaaaaagaagaaaaagaagaagaca
gcagagcagactgtatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (11)   
   UniProt (1)   
   RefSeq(pep) (10)   
DNA sequence (14)   
   RefSeq(nuc) (10)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (37)   

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