KEGG   Pan troglodytes (chimpanzee): 471959
Entry
471959            CDS       T01005                                 
Symbol
MDC1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
ptr  Pan troglodytes (chimpanzee)
Brite
KEGG Orthology (KO) [BR:ptr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ptr03400]
    471959 (MDC1)
DNA repair and recombination proteins [BR:ptr03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    471959 (MDC1)
SSDB
Motif
Pfam: BRCT_2 FHA RTT107_BRCT_5 BRCT Yop-YscD_cpl
Other DBs
NCBI-GeneID: 471959
NCBI-ProteinID: NP_001035841
Ensembl: ENSPTRG00000017938
VGNC: 56170
UniProt: Q7YR40
Position
6:complement(30174899..30193304)
AA seq 2171 aa
MEDTQAIDWDVEEEEETEQSSESLRCNVEPVGRLHIFSGAHGPEKDFPLHLGKNVVGRMP
DCSVALPFPSISKQHAEIEILAWDKAPILRDCGSLNGTQILRPPKVLSPGVSHRLRDQEL
ILFADLLCQYHRLDVSLPFVSRGPLTVEETPRVQGGTQPQRLLLAEDSEEEVDFLSERRM
VKKSRTTSSSVIVPESDEEGHSPVLGGLGPPFAFNLNSDTDVEEGQQPATEEASSAARRG
ATVEAKQSEAEVVTEIQLEKDQPLVKERDDDTKVKRGAENGVVPAGVILERSQPPGEDSD
TDVDDDSRPPGRPAEVHLERAQPFGFINSDTDAEEERIPATPVVIPMKKRKIFHGVGTRG
PGAPGLAHLQESQAGSDTDVEEGKAPQAVPLEKSQASMVINSDTDDEEEVSAALTLAHLK
ESQPAIWNRDAEEDMPQRVVLLQRSQTTTERDSDTDVEEEELPVENREAVLKDHTKIRAL
VRAHSEKDQPPFGDSDDSVEADKSSPGIHLERSQASTTVDINTQVEKEVPPGSAIIHIKK
HQVSVEGTNQTDVKAVGGPAKLLVVSLEEAWPLHGDCETDAEEDTSLAASAVADVRKSQL
PAEGDAGAEWAAAVLKQERAHEVGAQGGPPVAQVEQDLPISRENLTDLVVDTDTLGESTQ
PQREGAQVPTGREREQHVGGTKDSEDNYGDSEDLDLQATQCFLENQGLEAVQSMEDEPTQ
AFMLTPPQELGPSHCSFQTTGTLDEPWEVLATQPFCLRESEDSETQPFDTHLEAYGPCLS
PPRAIPGDQHPESPVHTEPMGIQGRGRQTVDKVMGIPKETAERVGPERGPLERETEKLLP
ERQTDVTGEEELTKGKQDREQKQLLARDTQRQESDKNGESASPERDRESLKVEIETSEEI
QEKQVQKQTLPSKAFEREVERPVANRECDPAELEEKVPKVILERDTQRGEPEGGSQDQKG
QASSPIPEPGVEAGDLPGPTSAPVTSGSQSGGRGSPVSPRRHQKGLLNCKMPPAEKASRI
RAAEKVSRGDQESPDACLPPTVPEAPAPPQKPLNSQSQKHLAPPPLLSPLLPSIKPTVRK
TRQDGSQEAPEAPLSSELEPFHPKPKIRTRKSSRMTTFPATSAAPEPHPSTSTAQPVTPK
PTSQATRSRTNRSSVKTPEQGVPTAPELQPCTSTDQPVTSEPTSQVTRGRKSRSSVKTPE
TVVPTALELQPSTSTDRPVTSEPTSHATRGRKNRSSVKTPEPVVPTAPELQPSTSTDQPV
TSEPTYQATRGRKNRSSVKTPEPVVPTAPELQPSTSTDQPVTPKPTSRTTRSRTNMSSVK
NPESTVPIAPELPPSTSTEQPVTPEPTSRATRGRKNRSSGKTPETLVPTAPKLEPSTSTD
QPVTPEPTSQATRGRTNRSSVKTPETVVPTAPELQLSTSTDQAVTPKPTSRTTRSRTNMS
SVKNPESTVPIAPELPPSTSTEQPVTPEPTSRATRGRKNRSSGKTPETLVPTAPKLEPST
STDQPVTPEPTSQATRGRTNRSSVKTPETVVPTAPELQPSTSTDQPVTPEPTSQVTRGRT
DRSSVKTPETVVPTAPELQASASTDQPVTSEPTSRTTRGRKNRSSVKTPETVVPTAPELQ
PSTSTDQPVTPEPTSQATRGRTNRSSVKTPESIVPIAPELQPSTSRNQLVTPEPTSRATR
CRTNRSSVKTPEPVVPTAPEPHPTTSTDQPVTPKLTSRATRRKTNRSSVKTPKPVEPAAS
DLEPFTPTDQSVTPEAIAQGGQSKTLRSSTVRAMPVPTTPEFQSPVTTDQPISPEPITQP
SCIKRQRAAGNPGSLAAPIDHKPCSAPLEPKSQASRNQRWGAVRAAESLTAIPEPASPQL
LETPIHASQIQKVEPAGRSRFTPELQPKASQSRKRSLATMDSPPHQKQPQRGEVSQKTVI
IKEEEEDTAEKPGKEEDVVTPKPGKRKRDQAEEEPNRIPSRSLRRTKLNQESTAPKVLFT
GVVDARGERAVLALGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSHK
AGFFLPPDEYVVTDPEQEKNFGFSLQDALSRARERRLLEGYEIYVTPGVQPPPPQMGEII
SCCGGTYLPSMPRSYKPQRVVITCPQDFPHCSIPLRVGLPLLSPEFLLTGVLKQEAKPEA
FVLSPLEMSST
NT seq 6516 nt   +upstreamnt  +downstreamnt
atggaggacacccaggctattgactgggatgttgaagaagaggaggagacagagcaatcc
agtgaatccttgaggtgtaacgtggagccagtagggcggctacatatctttagtggtgcc
catggaccagaaaaagatttcccactacacctcgggaagaatgtggtaggccgaatgcct
gactgctctgtggccctgccctttccatctatctccaaacaacatgcagagattgaaatc
ttagcctgggacaaggcacctatcctccgagactgtgggagccttaatggtactcaaatc
ctgagacctcctaaggttttgagccctggggtgagtcaccgtctgagggaccaggaattg
attctctttgctgacttgctctgccagtaccatcgcctggatgtttctctgccctttgtc
tcccggggccctctgacagtagaagagacacccagggtacagggaggaactcaaccccag
aggcttctgttggctgaggactcggaggaggaagtagattttctttctgaaaggcgtatg
gtaaaaaaatcaaggaccacatcttcctctgtgatagttccagagagtgatgaagagggg
cattcccctgtcctgggcggccttgggccgccttttgccttcaatttgaacagtgacaca
gatgtggaagaaggtcagcaaccagccacagaggaggcctcctcagctgccagaagaggt
gccactgtagaggcaaagcagtctgaagctgaagttgtaactgaaatccagcttgaaaag
gatcagcctttagtgaaggagagggacgatgatacaaaagtcaagaggggtgcagagaat
ggggtggttccagctggggtgattctggagaggagccaacctcctggagaggacagcgac
acagatgtggatgatgacagcaggcctcctggaaggccagctgaggtccatttggaaagg
gctcagccttttggcttcatcaacagcgacactgatgcggaagaagagaggatcccagca
accccagttgtcattcctatgaagaagaggaagatcttccatggagtaggtacaaggggt
cctggagcaccaggcctggcccatctgcaggagagccaggctggtagtgatacagatgtg
gaagaaggcaaggccccacaggctgtccctctggagaaaagccaagcttccatggttatc
aacagcgatacagatgacgaggaagaagtctcagcagcgctgactttggcacatctgaaa
gagagccaacctgctatatggaacagagatgcagaagaggacatgccccaacgtgtggtc
cttctgcagcgaagccaaaccaccactgagagagacagtgacacagacgtggaggaggaa
gagctcccagtggaaaatagagaagctgtcctcaaggatcacacaaagattagagccctt
gttagagcacattcagaaaaggaccaacctccttttggggacagtgatgacagtgtggaa
gcagataagagctcacctgggatccacctggagagaagccaagcctccaccacagtggac
atcaacacacaagtggagaaggaagtcccgccagggtcagccattatacatataaagaag
catcaggtgtctgtggaggggacaaatcaaacagatgtgaaagcagttgggggaccagca
aagctgcttgtggtatctctagaggaagcctggcctctgcatggggactgtgaaacagat
gcagaggaggacacctccttagcagcctcagcagttgcagatgtaagaaagagccagctt
ccagcagaaggggatgctggggcagagtgggctgcagctgttcttaagcaggagagagct
catgaggtgggggcccagggtgggccacctgtggcacaagtggagcaggacctccctatc
tcaagagagaacctcacagatctggtggtggacacagacactctaggggaatccacccag
ccacagagagagggagcccaggtccccacaggaagggagagagaacaacatgtgggtggg
accaaggactctgaagacaactatggtgattctgaagatctggacctacaagctacccag
tgctttctggagaatcagggcctggaagcagtccagagcatggaggatgaacctacccag
gccttcatgttgactccaccccaagagcttggcccttcccattgcagcttccagacaaca
ggtaccctagatgaaccatgggaggtcctggctacacagccattctgtctgagagagtct
gaggactctgagacccagccttttgacacccaccttgaggcctatggaccttgcctgtct
ccacctagggcaataccaggagaccaacatccagagagcccagttcacacagagccaatg
gggattcaaggcagagggaggcagactgtggataaagtcatgggtataccaaaagaaaca
gcagagagggtgggccctgagagagggccattggagagagaaactgagaaactgctacca
gaaagacagacagatgtgacaggagaggaagaattaaccaaggggaaacaggacagagaa
caaaaacagttgttagctagagacacccagagacaagaatctgacaaaaatggggaaagt
gcaagtcctgaaagagatagggagagtttgaaggtagaaattgagacatctgaggaaata
caagagaaacaagtacagaagcagacccttccaagcaaagcatttgagagagaagtagag
agaccagtagcaaacagagagtgcgatccagccgagttagaagagaaggtgcccaaagtg
atcctggagagagatacacagagaggggagccagagggagggagccaggaccagaaaggg
caggcctccagcccaataccagagcctggggtggaggcgggggaccttccgggacctacc
tcagcccccgtaacttctgggagccagtcaggtggaaggggatccccagtgagccccagg
aggcatcagaaaggcctcctgaattgcaagatgccacctgctgagaaggcttccaggatc
agagctgctgagaaggtttccaggggcgatcaggaatctccagatgcttgtctgcctcct
acagtgcctgaagccccagccccaccccaaaagccccttaactctcagagccagaaacat
cttgcacctccaccccttctttctccccttttaccttctatcaagccaaccgttcgtaag
accaggcaagatgggagtcaggaagctccagaggctcccttgtcctcagagctggagcct
ttccacccaaagcctaaaattagaactcggaagtcctccagaatgacaacctttccagct
acctctgctgcccctgagccccacccttccacctccacagcccagccagtcactcccaag
cccacatctcaggccactaggagcaggacaaataggtcctctgtcaagacccctgaacaa
ggtgtccccacagcccctgagctccagccttgcacctccacagaccagcctgtcacctct
gagcccacatctcaggttactaggggaagaaaaagtagatcctctgtcaagacccctgaa
acagttgtgcccacagcccttgagctccagccttccacctccaccgaccgacctgtcacc
tctgaacccacatctcatgctactaggggaagaaaaaatagatcctctgtcaagacccct
gaaccagttgtccccacagcccctgagctccagccttccacctccacagaccagcctgtc
acttctgagcccacatatcaggctactaggggaagaaaaaatagatcctctgtcaagacc
cctgaaccagttgtccctacagcccctgagctccagccttccacctccacagaccaacct
gtcacccccaagcccacatctcggaccactaggagcaggacaaatatgtcctctgtcaag
aaccctgaatcaactgtccctatagcccctgagctcccaccttccacctccacagagcag
cctgtcacccctgagcccacatctcgggctactaggggaagaaaaaatagatcctctggc
aagacccctgaaacacttgtccccacagcccctaagctcgagccttccacttctacagac
caacctgtcactcctgagcccacatctcaggccaccaggggcaggacaaataggtcctct
gtgaagacccctgaaacagttgtccccacagcccctgagctccagctttccacctccaca
gaccaagctgtcacccctaagcccacatctcggaccactaggagcaggacaaatatgtcc
tctgtgaagaaccctgaatcaactgtccctatagcccctgagctcccaccttccacctcc
acagagcagcctgtcacccctgagcccacatctcgggctactaggggaagaaaaaataga
tcctctggcaagacccctgaaacacttgtccccacagcccctaagctcgagccttccact
tccacagaccaacctgtcactcctgagcccacatctcaggccaccaggggcaggacaaat
aggtcctctgtgaagacccctgaaacagttgtccccacagcccctgagctccagccttcc
acctccacagaccagcctgttacccctgagcctacgtctcaggttactaggggaagaaca
gatagatcctctgtcaagacccctgaaacagttgtccccacagcccctgagctacaggct
tccgcctccacagaccagcctgtcacctctgagcccacatctcggaccactaggggaaga
aaaaatcggtcctctgtcaagacccctgaaacagttgtgcccacagcccctgagctccag
ccttccacctccacagaccaacctgtcacccctgagcccacatctcaggccactaggggc
aggacaaataggtcctctgtcaagacccctgaatcaattgtccctatagcccctgagctt
cagccttccacctccagaaaccagcttgtcacccctgagcccacatctcgggccactagg
tgcaggacaaataggtcctctgtcaagacccctgagccagttgtccccacagcccctgag
ccccatcctaccacctccacagaccagcctgtcacccccaagctcacatctagggccact
aggagaaagacaaataggtcctctgtcaagactcccaaaccagttgaaccagcagcctct
gatcttgagccttttacccccacagaccagtccgtcacccctgaggccatagctcagggt
ggtcagagcaaaacactgaggtcttccacagtaagagctatgccggttcctaccacccct
gaattccaatctcctgtcaccacagaccagcctatttcccctgagcctattactcaaccc
agttgcatcaagaggcagagagccgctgggaaccctggctccctcgcagctcccattgac
cataagccttgctctgcacccttggaacctaaatcccaggcctcaaggaaccaaagatgg
ggagcagtgagagcagctgaatcccttacagccattcctgagcctgcctctccccagctt
cttgagacaccaattcatgcctcccagatccaaaaggtggaaccagcaggtagatctagg
ttcaccccggagctccagcctaaggcctctcaaagccgcaagaggtctttagctaccatg
gattcaccaccacatcaaaaacagccccaaagaggggaagtctcccagaagacagtgatt
atcaaggaagaggaagaagatactgcagagaagccagggaaggaagaggatgtcgtgact
ccaaaaccaggcaagagaaagagagaccaggcagaggaggagcccaacagaataccaagc
cgcagcctccgacggaccaaacttaaccaagaatcaacagcccccaaagtgctcttcaca
ggagtggtggatgctcggggagagcgggctgtgctggcactggggggaagtctggctggt
tcagcggcagaggcttcccacctggtcactgatcgcatccgccggacagtcaagttcctg
tgtgccctggggcggggaatccccattctgtccctggactggctgcatcagtcccacaag
gctggtttcttcttacccccggatgaatatgtggtgaccgaccctgagcaagagaagaac
tttggctttagccttcaagacgcactgagcagggctcgggagcgaaggctgctagagggc
tatgagatctatgtgacccctggagtccagccaccaccacctcagatgggagagatcatt
agctgctgtggaggcacatacctacccagcatgcctcggtcctataagcctcagagagtt
gtgatcacatgccctcaggacttccctcattgctccattccactacgggttgggctgccc
ctcctctcgcctgagttcctgctgactggagtgctgaagcaggaagccaagccagaggcc
tttgtcctctcccctttggagatgtcatccacctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (34)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (32)   
DNA sequence (34)   
   RefSeq(nuc) (32)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (82)   

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