KEGG   Paraburkholderia terricola: CUJ90_06430
Entry
CUJ90_06430       CDS       T05812                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
pts  Paraburkholderia terricola
Pathway
pts02024  Quorum sensing
pts03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pts00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CUJ90_06430
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CUJ90_06430
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pts03019]
    CUJ90_06430
   03036 Chromosome and associated proteins [BR:pts03036]
    CUJ90_06430
Messenger RNA biogenesis [BR:pts03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CUJ90_06430
Chromosome and associated proteins [BR:pts03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CUJ90_06430
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AXE92033
Position
mHS1_A:1441616..1441852
AA seq 78 aa
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
STVVPARPVNFHPDSEQS
NT seq 237 nt   +upstreamnt  +downstreamnt
atgagcaacaaagggcaattgttacaagacccgtttttgaacgcactgcgtaaagagcat
gtgccggtgtcgatctacttggtcaacggcatcaagcttcaagggaacatcgaatcgttc
gaccagtacgtcgtgttgctcaggaatacggtcacccagatggtctacaagcacgcaatt
tctactgtcgtgcctgcccgtccggtgaacttccacccggattccgaacagtcctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

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