KEGG   Paraburkholderia terricola: CUJ90_17025
Entry
CUJ90_17025       CDS       T05812                                 
Name
(GenBank) RNA-splicing ligase RtcB
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
pts  Paraburkholderia terricola
Brite
KEGG Orthology (KO) [BR:pts00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pts03016]
    CUJ90_17025
Enzymes [BR:pts01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     CUJ90_17025
Transfer RNA biogenesis [BR:pts03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    CUJ90_17025
 Prokaryotic type
   tRNA splicing ligases
    CUJ90_17025
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: AXE93837
Position
mHS1_A:3770801..3772012
AA seq 403 aa
MDYQLMEVADGKPVKMWTEGVAVDDFARDQLAHAAKLPFIFRHLAVMPDVHAGKGSTIGS
VIPTLGAIIPAAVGVDIGCGMMAARTTLNAADLPDSLAGLRSAIERAVPHGRAPGRRDPG
AWDRPPQPVDVAWKALAEGFKRIVDKYPKLARTNNYVHLGTLGTGNHFVEVCVDEANSVW
FMLHSGSRGVGNAIGNLFIELAQADMRQHIANLPDRNLAYFEEGSAHFDDYVEAVGWAQD
YARRNRELMMDAVVRAARSVIAKPFSLDEHAVNCHHNYVQKERHFGSEILVTRKGAVSAQ
KGQLGIIPGSMGAKSFIVRGLGNAESFCSCSHGAGRSMSRTEAKRRFSVDDQIKATAHVE
CRKDAGVIDEIPMAYKDIDAVMAAQRSLVEVVHTLRQVVCVKG
NT seq 1212 nt   +upstreamnt  +downstreamnt
atggattaccaactgatggaagtagcggacggcaagccggtgaaaatgtggaccgaaggc
gtcgccgtcgacgacttcgcgcgcgaccaactcgcccacgccgcgaaactgccgttcatt
ttcaggcacttggccgtcatgcccgacgtgcacgccggcaaaggctccacgatcggcagc
gtgattccgacgctcggcgcgatcattccggctgcggtcggcgtggatatcggctgcggc
atgatggccgcgcgcaccacgctcaacgccgccgatctgccggactcgctcgcgggtctg
cgcagcgcgatcgaacgcgcggtgccgcacggccgtgcgccgggccggcgcgatccaggc
gcgtgggatcggccgccgcagccggtcgacgttgcatggaaagcgctcgccgaaggcttc
aagcgcatcgtcgacaaatatccgaaactcgcgcggaccaacaactatgtgcatctcggt
acgctcggcaccggcaatcacttcgtggaagtgtgcgtcgacgaagcaaactcggtgtgg
tttatgctgcacagcggctcgcgcggcgtcggcaacgcgatcggcaacctgttcatcgaa
ctggcgcaggcggacatgcggcagcacatcgccaacctgccggaccgcaatcttgcctac
ttcgaggaaggcagcgcgcacttcgacgattacgtggaagcggtgggctgggctcaggac
tatgcgcggcgcaatcgcgaactgatgatggacgcggtggtccgcgcggcgcggtcggtg
atcgccaagccgttttcgctcgatgagcacgcggtgaactgccaccacaactacgtgcag
aaggagcgtcacttcgggtcggagattctggtcacgcgtaaaggggcggtgtcggcgcag
aagggtcagctcggcatcattccgggttcgatgggcgcgaaaagttttatcgtgcgcggc
ctcggcaacgccgaaagcttctgctcgtgcagccacggcgcggggcgctcgatgagccgc
acggaagccaagcggcgcttttccgtcgacgatcagatcaaggcgaccgcgcacgtcgaa
tgccgtaaggacgcgggcgtgatcgacgaaatcccgatggcctacaaggacatcgacgct
gtgatggccgcgcagcgcagcctcgtcgaagtggtgcacacgctgcggcaggtggtgtgt
gtgaagggatag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (1)   
   Pfam (1)   
All databases (8)   

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