KEGG T05187: PTUN

Pseudoalteromonas tunicata: PTUN_a2512

Entry

PTUN_a2512        CDS       T05187

Symbol

rne

Name

(GenBank) ribonuclease E

K08300

ribonuclease E [EC:3.1.26.12]

Organism

ptu Pseudoalteromonas tunicata

Pathway

ptu03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:ptu00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PTUN_a2512 (rne)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptu03019]
    PTUN_a2512 (rne)
   03009 Ribosome biogenesis [BR:ptu03009]
    PTUN_a2512 (rne)
Enzymes [BR:ptu01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     PTUN_a2512 (rne)
Messenger RNA biogenesis [BR:ptu03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PTUN_a2512 (rne)
Ribosome biogenesis [BR:ptu03009]
Prokaryotic type
  rRNA processing factors
   PTUN_a2512 (rne)

SSDB

Motif

Pfam:

RNase_E_G RNase_E_G_Thio S1

Other DBs

NCBI-ProteinID:

ATC94979

Position

I:2321448..2324690

AA seq 1080 aa
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAQRHGFLPLKEIARTYFPKDYNFSGRPNIKDVIKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERTDLKDALSRLELPKGMGLIVRTAGVGKSFEEL
DYDLKALLIHWDAIVTASEKGPAPFLIHQESNVIFRAIRDYLRRDIGEILIDKTRVFEEA
KAHIERFRPDFMSRVKLYKGEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVEN
RLKEAVRPDRARVQIGKISRFGLLEMSRQRLRPSLGEASQGTCPRCNGQGTIRSTESIAL
SILRLIEEEAIKDNTAQVNAQVPVSVAAYLLNEKRRSVSAIEKHHECDVVIVPNQHMETP
HYEVHRLKHDETVESVSYSQIKKPEAMSFDASKIQKVEKEQPALQGVISPTEPAPVAKKP
EPAPVAVAPSEGLLSKLTRWVKSLFASEEKPEVKEAQERTTPPRNNDSRRRNNSRARPPR
KSVDASDSATKPADKPVRDNSDSRVERDSRDNKNKRRRSPNRKPASEVVETAAAAVEAVV
EQQPEPRFKERRQRRNLRKKVRVTEDVLETLTLDDIKVVEPAPQVQVKTAQADVKVEDKP
STKTEKVISDEDVGFDNVDALNNEEDGADSKEPRSRSRRSPRHLRAAGQKRRKPNEGENT
AQIETVESPGFVPVADQEIAAQQSRKQQALKVAVDAVDAVDAVDAKIVEDSAPVATTEVP
VIEVTSTEVASIEVSKTTDIEPAEVVSDVLAVTTAVVEQTQSDEVAQSVEVSPVVEVSPA
VEQSVLVSEDVTQTAIEAETTPVNDVEISTDTALQSTDTPLVIETEASEAETVIETETSE
TEVNQESKEAEATDVTNAAVEQVVETVMAVEVESTPNVEVESTPAIGAEQNPVTVVEARV
SAIASAPMTKPTAIALTENVTLPSAMPAEQRVQVQYSEQQSGSIAPTSRASAPMTKAQAV

NT seq 3243 nt +upstreamnt +downstreamnt
atgaaacgtatgctaatcaatgctacgcagcaagaagaaatgcgcgtcgcactggttgac
ggccaacgcttatacgatctagatatcgaaagcccaggtcacgaacagaaaaaagctaat
atttacaaaggtaaaattacccgcgttgaaccaagtttagaagctgcatttgttgattat
ggcgcacaacgccatggtttccttcctttaaaagaaattgcccgcacttactttcctaaa
gattataacttcagtggtcgtccaaatatcaaagacgtgatcaaagaaggtcaagaagtt
attgttcaagtagacaaagaagaacgtggtcaaaaaggtgctgcattaactacgtttatc
agtgtcgctggtagttatttagtattaatgccaaataacccgcgtgcaggtggtatttct
cgtcgtattgaaggggatgagcgtactgatcttaaagatgcattaagccgtttagaatta
ccaaaaggcatgggactcattgttcgtactgctggtgttggtaaatcatttgaagaactc
gattacgacttaaaagcactacttattcactgggatgccattgttacagcctctgaaaaa
ggccctgctccgtttttaatccaccaagaaagcaacgtaattttccgtgctattcgtgat
tatttacgtcgtgacattggtgaaattctgattgataaaacacgcgtttttgaagaagca
aaagcccatatagagcgttttcgccctgattttatgagccgcgttaaactttacaaaggc
gaagtaccgctgtttactcattaccaaattgaaagtcaaatcgaatcagcgtttcaacgc
gaagtacgtctaccttcaggaggttcaattgtaattgacccaacagaagccttgacctca
attgatatcaactcatcaaaagccactaaaggtggtgatattgaagaaacagcatttaat
accaatttagaagctgctgatgaaattgcccgtcaattgcgtttacgtgatttaggtggc
ttaattgttatcgactttatcgatatgacaccaccacgtcatcaacgtgaagttgaaaat
cgtttaaaagaagccgtacgccctgaccgtgctcgtgttcaaatcggtaaaatctcacgt
tttggtttacttgaaatgtcgcgtcaacgtcttcgcccttcattaggtgaagcaagccaa
ggcacctgtccgcgttgtaatggccaaggtacaattcgctcgacggaatcaatcgcacta
tcaattttgcgtttaatcgaagaagaagcgataaaagacaatacagcacaagtgaatgct
caagtgcctgtgagcgttgctgcgtacttgctcaatgaaaaacgccgcagcgtcagtgct
attgaaaaacatcatgaatgtgatgtggttattgtgccaaatcagcacatggaaacccct
cattatgaagtgcaccgtctaaaacacgatgaaaccgttgaatcggtaagctacagccaa
attaaaaagcctgaagcgatgtcgtttgatgccagcaaaattcaaaaagttgaaaaagaa
caacctgcattacaaggtgttatttcacctactgaacctgctccagttgccaaaaaacct
gagcctgctccagttgctgttgcgccaagtgaaggtctactgagcaagctgactcgttgg
gtaaaaagtttattcgcgagcgaagaaaagcccgaagttaaagaggcccaagagcgtacg
actcctccacgtaataacgattctcgtcgtcgcaataacagtcgtgcgcgtccaccacgc
aaatcggtcgatgcaagtgattcggctacaaaaccagctgataagccggttcgtgataat
agcgattcacgtgtggaacgtgatagccgtgataacaaaaacaagcgtcgtcgctcacct
aaccgtaaacctgcaagcgaagtagttgaaactgccgccgctgctgttgaagcagttgtt
gagcaacaacctgagccgcgctttaaagagcgccgtcaacgccgtaatttgcgtaaaaaa
gtacgtgtaactgaagatgtgcttgagactttaacactggacgatattaaagttgttgag
ccagcaccacaagtgcaagtaaaaaccgctcaagcagacgttaaagttgaagataagcca
agcactaaaactgagaaagttatcagtgatgaagacgttggttttgataatgttgatgct
ttaaacaatgaagaagatggcgcagactcgaaagaaccgcgtagtcgctctcgtcgttca
cctcgtcatttacgtgctgcgggtcaaaaacgccgcaaaccaaatgaaggtgaaaatact
gcacaaatagagacagtggaatcgccaggtttcgtacctgttgcagaccaagaaatagca
gcacagcaatctcgcaaacaacaagcattaaaagttgcggttgatgcggttgatgcggtt
gatgcggttgatgcgaaaattgttgaggattctgctccagttgcaacgactgaagtacct
gtgattgaagttacatcaacggaagtcgcttcaatagaggtgagtaaaacaacggatatt
gaacctgctgaagtggtaagtgatgtattagctgttacgactgccgttgttgaacagact
caaagcgatgaagttgcgcaatctgttgaagttagtcctgtggttgaagttagtcctgcg
gttgaacaaagtgttctagtatctgaagatgtaacgcaaacagcgattgaagccgaaact
acaccagtaaatgatgttgaaatatcgacagacactgctctgcagtctacggatacgccg
cttgtaattgaaactgaagcgtcagaagctgaaacagtaattgaaactgaaacgtcagaa
actgaagtaaaccaagaatctaaagaagcagaagctactgatgtaacaaatgctgctgtt
gaacaagtggttgaaacagttatggcagttgaagttgaatcaacacctaacgttgaagtt
gaatcaacaccagctattggtgctgaacaaaaccctgttacggttgttgaagcccgagtg
tctgcaattgccagtgcaccaatgactaaaccaacagctattgcgttaactgaaaatgtt
actctacctagcgcgatgccagcagagcaaagagtacaagtacaatacagtgagcaacaa
tcaggttcaattgcaccgactagtcgtgcaagtgcaccaatgactaaagctcaagcagtt
taa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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