KEGG   Pseudomonas trivialis: AA957_17410
Entry
AA957_17410       CDS       T04006                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ptv  Pseudomonas trivialis
Pathway
ptv03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ptv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AA957_17410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ptv03021]
    AA957_17410
   03400 DNA repair and recombination proteins [BR:ptv03400]
    AA957_17410
Enzymes [BR:ptv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AA957_17410
Transcription machinery [BR:ptv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AA957_17410
DNA repair and recombination proteins [BR:ptv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AA957_17410
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Peptidase_M23 DUF3150 Biotin_lipoyl
Other DBs
NCBI-ProteinID: AKS07821
UniProt: A0A0H5AA20
Position
3871519..3875718
AA seq 1399 aa
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGGSVSGTRIVDTTVGRALLYQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIAAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEEVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGCLVAVSRSGELAIADDYGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLAGDEKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq 4200 nt   +upstreamnt  +downstreamnt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgcattggattggcatcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaacctgaacgtgacggcctgttctgcgccaag
atctttggcccggttaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgtggtgtgatctgcgagaagtgcggcgttgaagtcgcgctggccaaggttcgtcgtgag
cgcatggcgcacatcgaattggcttcgccggttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctacgtcgttatcgacccaggcatgaccacccttgaaaaaggtcagctgctg
aacgacgaacagtacttcgaagcgctggaagagttcggcgacgatttcgatgcccgcatg
ggtgccgaagctgtccgtgagctgctgcacgctatcgacctggaacacgagattggccgt
ctgcgtgaagagattccgcaaaccaactccgaaaccaagatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacttgccagagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtccgctggtaccgttggacggtggtcgtttc
gcgacgtccgacctcaacgacctgtaccgccgcgtgatcaaccgtaacaaccgcttgaag
cgcctgctcgatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcaa
gaagctgtcgatgccttgctcgacaacggtcgtcgtggccgcgctatcaccggttcgaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgcctaagaagatggcacttgagctgttcaagccattc
atcttcggcaagctggaaatgcgcggtctcgcgaccaccatcaaagcggccaagaaaatg
gtcgagcgcgaactgccagaagtttgggacgttctcgctgaagtgattcgcgaacacccg
gttctcctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacactggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgacccgtgaagcgatcaacgcc
aaaggcgaaggtcgtgtgttcgctgacctgcaagaagttgaccgtgtgttccgtgccggc
gaagccgcactgcacgccaaggttaaagtgcggatcaacgaaaccgtaaacgaccgtgac
ggtggcagcgtgagcggcactcgtattgtcgacaccactgtcggccgtgcgctgttgtat
caagttgtgccaaaaggtctgtcgtacgacgtcgtcaacctgccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggttttgcttattcgaccatctccggcgtttccatcggt
gttaacgacttcgttatccctgatgaaaaagctcgcatcatcgcggctgcaaccgatgaa
gtgaaagagatcgaaagccagtacgcctcgggcctggtaacacagggcgagaagtacaac
aaagtgatcgacctttggtccaaggccaacgacgaagtgtcgaaggcgatgatggctaac
ctctcgaaagagaaggttatcgaccgtcatggcgtagaagtcgatcaagagtcgttcaac
tcgatgtacatgatggccgactcgggtgcacggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggttccatcatcgaaacgccgattact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctcgactcacggtgctcgt
aaaggtctggcggataccgcgttgaaaaccgctaactccggttacctgactcgtcgtctg
gtagacgttgcacaagacttggtagtgactgaagttgactgcggtaccgaacacggtctg
ctgatgactccgcacatcgaaggcggcgacgttgtagaaccgttgggtgagcgcgtattg
ggccgagtcattgcccgtgacgtattcaagccaggtaccgaggaagttatcgttcctgct
ggcaccctggtagatgaaaagtgggtcgagttcatcgaactcaacagcatcgacgaagtg
atcgttcgctcgccgatcagctgcgaaacccgctacggcatctgcgccaagtgctacggc
cgtgacttggctcgtggtcaccaggtgaacatcggtgaagcggtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgcg
gcaagccggacctccgcagctgacagcgttcaggtgaagaatggcggtactgtccgtctg
cacaacctgaaacacgttgagcgagtggatggctgcctggttgctgtgtcccgttccggt
gagctggcaatcgctgatgactacggtcgtgagcgtgagcgttacaagctgccgtacggt
gctgtgatttcggttaaagaaggtgacaaggtcgacgctggcgcaatcgtggccaagtgg
gatccgcacactcacccaatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtactcgacgcgaaagatcgtccagctgccggtaaagacatccgtcctgccgttaagatg
gtcgatgacaacggtaaggatctgttgctgccaggcactgacgtaatcgctcagtacttc
ctgccagccaacgccctggtcggtgtagcggatggtgcgaagatcgcgatcggtgatgtt
atcgcgcgtatcccgcaagaaacttcgaaaacccgtgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagctcgtcgtccgaaagaagcgtcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagaaaccaaaggcaagcgccgtctggtcattaccccgaac
gacggtagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgttaacgagatccaggacgtt
tatcgcctgcaaggcgtgaagatcaacgataagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgaaatcgctgaatccggcgattccagtttcatcaagggcgaccagatg
gaactgactcacgtactggtagagaacgagcgtctggctggcgacgagaaattcgtttcc
aagttcactcgtgtgttgctgggtatcaccaaggcgtcgttgtccactgagtcgttcatc
tcggcggcctccttccaggagaccactcgcgtactgaccgaagcagcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtggttgtgggtcgtttgatcccagctggt
accggtttggcttaccacagcgagcgcaagcgccgccgtgatgctgacaagccgctgcgc
gtgagcgccagtgaagtggaagctgcactgaccgaagcgctgaactctagcggtaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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