KEGG   Candidatus Pelagibacter ubique: SAR11_0257
Entry
SAR11_0257        CDS       T00257                                 
Symbol
dapF
Name
(GenBank) Diaminopimelate epimerase (DAP epimerase)
  KO
K01778  diaminopimelate epimerase [EC:5.1.1.7]
Organism
pub  Candidatus Pelagibacter ubique
Pathway
pub00300  Lysine biosynthesis
pub00470  D-Amino acid metabolism
pub01100  Metabolic pathways
pub01110  Biosynthesis of secondary metabolites
pub01120  Microbial metabolism in diverse environments
pub01230  Biosynthesis of amino acids
Module
pub_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:pub00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00300 Lysine biosynthesis
    SAR11_0257 (dapF)
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    SAR11_0257 (dapF)
Enzymes [BR:pub01000]
 5. Isomerases
  5.1  Racemases and epimerases
   5.1.1  Acting on amino acids and derivatives
    5.1.1.7  diaminopimelate epimerase
     SAR11_0257 (dapF)
SSDB
Motif
Pfam: DAP_epimerase AAA_7 LOH1CR12
Other DBs
NCBI-ProteinID: AAZ21079
UniProt: Q4FP10
Position
260349..261173
AA seq 274 aa
MDIKAFKMDGLGNDFVIIDQRSQDFNLDKDQIIKICDRSFIGCDQLILIKKNKEIDANVE
FFNSDGSISGACGNGTRCVADLLSKESGKKEITLLTTSGSLKSKILGNNLVETEIGIPKV
NWQEIPLSKQLDTQDLKIEIIDRNNTKHIGGIAINVGNPHIIFFVDDIEAFDLKNIGPKI
ENHPLFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATAVAANINNLVEKTTD
IEFVLGSLTISIDERNSIHMKGPVSDIKNINIKL
NT seq 825 nt   +upstreamnt  +downstreamnt
atggatattaaagcatttaaaatggatggtttaggcaatgattttgtaattattgatcaa
agaagccaagattttaatttagataaagatcaaataattaagatatgtgatcgtagtttt
attggatgcgatcaactcatcctaattaagaaaaataaagaaatagatgcaaatgtagaa
ttttttaattcagatggaagcatatctggtgcttgtggaaatggcactaggtgtgttgca
gatcttctatcaaaagaaagtggtaaaaaagaaataacgctcttaacaacttctggctca
ctaaaatcaaaaattttaggaaataatttagtcgagactgaaattggtataccaaaagtt
aattggcaagaaattccattaagtaagcagctagatactcaagacttaaaaattgaaatt
atagatagaaataataccaaacatattggtggaatagccataaatgtaggcaatccgcac
ataattttttttgtagatgatattgaagcatttgacttaaaaaatattggtccgaaaatt
gaaaatcatcctctatttcctgaaaaatgtaatgtgaccctagccaaagttataaataga
aatttaataaaagtaaaagtttgggaaagaggagctggacttaccaaggcttgtgggacg
gcagcttgtgcaacagctgttgcagctaacattaataatctggtagaaaaaactacagat
atagagtttgtcttaggtagtttaacaatttctattgatgaaagaaatagcattcatatg
aaaggacctgtgtctgatattaaaaatatcaacattaagttgtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (9)   
   KEGG PATHWAY (6)   
   KEGG MODULE (3)   
Chemical substance (2)   
   KEGG COMPOUND (2)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (1678)   
   KEGG ORTHOLOGY (1)   
   RefGene (1675)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (3)   
   Pfam (3)   
All databases (1699)   

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