KEGG   Candidatus Pelagibacter ubique: SAR11_1010
Entry
SAR11_1010        CDS       T00257                                 
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pub  Candidatus Pelagibacter ubique
Pathway
pub03410  Base excision repair
pub03430  Mismatch repair
pub03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pub00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    SAR11_1010 (recJ)
   03430 Mismatch repair
    SAR11_1010 (recJ)
   03440 Homologous recombination
    SAR11_1010 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pub03400]
    SAR11_1010 (recJ)
DNA repair and recombination proteins [BR:pub03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     SAR11_1010 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     SAR11_1010 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SAR11_1010 (recJ)
SSDB
Motif
Pfam: DHHA1 RecJ_OB DHH Toprim HisK_sensor
Other DBs
NCBI-ProteinID: AAZ21817
UniProt: Q4FLX1
Position
988522..990216
AA seq 564 aa
MISVSGKKWEQKKINQNIVDKLKQEHDFSEILSRLIISRKFDNDEIATINTDLDLNNVFL
NNKDFSQSINLVVNSINNNEKICILGDYDVDGSAATSLFVKFFEDINHPFFYYIPDREKD
GYGATKKLFQKLILEKPKLIIMVDCGSTSNEAIDFLNENEIKSLIIDHHEINKPFPNANS
IINPKKDNSYKEYDYLCATTLTYFFLDLLIKKIKTKINISDYLIYVLLATVCDVMPLRKL
NRLIALNALKNFDITKNLPLSTLFDLNEKKNKININDLGYLIGPILNAGGRLGKSQYATE
LLSSNNDQVIKDRSTYLIKLNNKRKEIENLLLNEIDFKKIEKENKEVIIYYNPNINEGLI
GIIAARLKDYFNKPSIVITASNELLKGSARSVYNYNIGRIIKNLLDKDIIINGGGHNMAA
GFTLNKANLKDFENYILEDFLKSNTVNNNIFSYESEVSPLAFNQDFYDDIKKLEPFGTGN
SVPTFMLRDLKIIKPIVLNNKHISVILKSKTGFSIKSISFNTINTMIGEHLMSYKNNINV
IGQIGENIWNNKKTLQLTIRDLIL
NT seq 1695 nt   +upstreamnt  +downstreamnt
atgatttctgtttcaggtaagaagtgggaacaaaaaaaaattaatcagaatattgttgat
aaattaaaacaagaacatgattttagtgaaattttatctagattaattatttcaagaaaa
tttgataatgatgaaatagcaacaatcaatacagatttagatttaaacaatgttttttta
aataataaagatttcagtcaatctattaaccttgttgtaaattccatcaataataatgaa
aaaatatgcattttaggtgattatgacgttgatggctctgcagctacatctttatttgtt
aaattttttgaagatataaatcatccatttttttactatatacctgatagagaaaaagat
ggttatggagctaccaaaaaactattccaaaaactgatcttagaaaagcctaaattaatt
attatggtggattgtggctcaacatctaatgaagcaatagattttttaaatgagaatgaa
ataaaatctttaatcattgatcatcacgaaattaataagccttttccaaatgcaaattca
attataaacccaaaaaaagataatagttataaagaatatgactatttgtgtgcaactaca
cttacatatttttttttagatttattgattaaaaaaatcaaaactaaaataaatatatct
gattatttgatatatgttttgttggctacagtatgtgatgttatgcctttaagaaaactt
aatagattaattgcattaaatgcccttaaaaattttgatataacaaaaaatttaccacta
agtactttgtttgacttaaatgaaaaaaaaaataaaattaatattaatgatttaggctat
ttaattggccctatattaaacgctggtggtaggttgggtaagtcacaatatgctacggaa
ttattatcttctaataacgatcaggttatcaaagataggtctacttatttaattaaattg
aataataaaagaaaagaaatagaaaatttgctattaaatgaaattgattttaaaaaaatt
gaaaaagaaaataaagaagtaataatttattataatccaaatataaacgaaggtttaatt
ggaattattgcagcaagattaaaagattactttaataaaccctccattgttattacagca
tctaatgaattattaaaaggatctgcaagatcagtttataattataatattggtcgcata
attaaaaatttactagataaagatataattataaatggtggtggtcataatatggctgca
ggatttacgctaaataaagcaaatcttaaagattttgaaaattatatattagaggatttt
ttaaaatctaatactgtaaataataatatattttcatatgaatcagaagtttcgccatta
gcatttaatcaagatttttatgatgatataaaaaaattagaaccttttggtacaggaaac
tcagtacccacattcatgctaagagatctaaaaataattaaaccaatagttctaaataac
aagcatatatctgtaatattaaaatcaaaaacaggattttcaattaaatcaatatcgttt
aatactattaatactatgattggtgaacacttaatgagttataaaaataacattaatgta
ataggccaaatcggagagaatatctggaataataaaaaaactcttcaattaactattaga
gaccttatcctataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2446)   
   KEGG ORTHOLOGY (1)   
   RefGene (2443)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (2458)   

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