KEGG   Penaeus vannamei (Pacific white shrimp): 113821791
Entry
113821791         CDS       T06111                                 
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like
  KO
K12571  PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
Organism
pvm  Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pvm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    113821791
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvm03019]
    113821791
Enzymes [BR:pvm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     113821791
Messenger RNA biogenesis [BR:pvm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     113821791
  mRNA degradation factors
   3'-5' decay
    Pan complex
     113821791
SSDB
Motif
Pfam: UCH_1 PAN2_N RNase_T UCH zf-CCCH_2 DNA_pol_A_exo1
Other DBs
NCBI-GeneID: 113821791
NCBI-ProteinID: XP_027230119
Position
Unknown
AA seq 1279 aa
MDFSAVQFGEEMLGYDGSNTFSEEGTAYAEIYGGEGGEGFPAGGEFAHDSQEVEFMNGGD
YQESQTVLVDGGDRFGVSAVTVDRKEELVWMGNSGGHVTSYLSTELMKYTSFQVHATEEI
RDLRSTDAGVLALTPTSLNLWTRQGIPVFSHRSPQLENMQCMLQLGGNFSHRLLLGGHQG
SMVEYDLTRQEQTRCHQVGEQGCVILRDHARFVCHGDLTGRIVLHDPRTMRQEHYFQAHT
GSLSDFDVLGNYIATCGFSNRMGQMMGDQFVMVFDLRMMKLSLPLRALVPPFLLRFVPGL
SSCLAVVSPLGHWQLMDAGQPDNAIMSMSYQVNCSPESVITTFDVASSSQALVFGDNLGS
LHLFSTGNKPTFNNFSQETIMPDLPEQVQTMPLTDSTSSIASLPMYYPTSALLSDWPEQY
MRARYRPTPPVDPSILASMKIVGSIGYAPNLHNRKRNQVPYKFSRNKGPKSNSNENSTGK
NEDGIAVHVPWRYRKMEIKYSKLGMDDFDYDQYNRTSFSGLDMSLPNSYCNPMLQMFYYV
APLRALMMSHLCEREFCLVCELGFLFHMLDVSMGQGIPCHASNFLRAFRTIPEASAMSLT
LSDQDNRAKINFALKIQSWNRFVLQQLHTETLEERVPAEGRPPPVPDTPQEALTEDTQAG
QPAEVPVPEEKAVVIDGKTIECQDKREFSPVADIFGSHTVSVNRCTRCNHEIHKETTSLL
VNLSYPEFNSDSSPGSIPFSSVVERSMSLEQTRQAWCDSCTRYQPIEQWRRYKKLPNILA
MNCGLDSAQDIKFWRHQFEILLTEVRDKLKKEEGEKKEAEGKNGSEERENRFPDRVTPSL
STGSPSTPSKRYPENSTPQSQGRPCRYGNACSRSDCRFWHPGRDGGEGQQPVHVLSLLDQ
TMEYSWVPLGMRAKLNENGTVSLSDISKAELEEGVEDESGVIYDLVGVVSHICDPRYPDK
NNLVACIKVGPSYHVQAKVSSVSHWYLFNDISIQPIAPEEAVWFPCGWKTPCVMYWQRRQ
LPQEIQNLGPVNPITADVFGEDKSLAQRGRKRITFTPLTADEMPGEGDLVAMDAEFVNLH
QEEAEIRSDGTRTTIKPSHKSVARITCIRGQGPLEGTPFLDDYISTQEQVVDYLTQFSGI
KPGDLDANFSQKHLTTLKSTYVKLRYLVDKGVKFVGHGLKNDFRVINMTVPMSQLIDTVH
LFHMSHNRMVSLKFLAWHFLKLKIQSVTHDSIEDARTALALYQKYCQLKASGDLVMELQN
LYEAGKKAQWKVPGEEEEE
NT seq 3840 nt   +upstreamnt  +downstreamnt
atggatttttcagctgtccagtttggggaagaaatgcttgggtatgatgggagcaacacc
ttcagcgaagagggcacagcctatgcagaaatatacggtggggagggtggggaaggcttc
ccagctggtggtgaatttgcccatgactcccaagaagtagaattcatgaatggtggagat
taccaggagagccagacggtgttggtggatggaggcgaccgctttggagtgtcagctgtc
actgtggacaggaaggaggagctcgtctggatgggtaactctgggggacacgtgacctcc
tatctcagcacagaactcatgaaatatacatcttttcaagttcatgccacagaagaaatc
cgtgatttaaggtcaactgatgcaggtgttctggccctcacacctacttcactaaacctt
tggaccagacaaggaatcccagttttttcccatagatcaccacagttagagaacatgcag
tgcatgcttcaactcgggggcaacttttctcatcgccttctgcttgggggtcatcagggc
tccatggtggaatatgacctcacacggcaagagcagactcgatgtcaccaggtaggagaa
caaggttgtgtaatcttgcgtgatcatgcccgttttgtgtgccatggagacttaacaggc
aggattgttctccatgatcctcgaacaatgcgacaggagcactacttccaggcgcacaca
ggaagcttgtcagactttgatgtccttgggaactacattgcaacgtgtggcttctcaaac
agaatgggacagatgatgggtgaccagtttgttatggtgtttgacttgcggatgatgaag
ttgtccctgcctctgagggcactagtccctcctttccttctccggtttgtgcctggcctc
tcatcatgcctggccgtggtctcgcccctcggccactggcagctcatggatgcagggcag
cctgacaatgccatcatgagcatgagctatcaggtcaactgctcaccagagagtgtcatc
acaacgtttgacgtagcatcatcatcacaggccttagtgtttggggataatttggggtcg
ttgcatctcttcagcacaggaaataaaccaactttcaataacttttcacaagagactata
atgccagatctaccggaacaagtgcagacgatgcccctaacagattccacctcctccatt
gcctcacttcctatgtactacccaaccagcgcattattatcagactggccagaacagtat
atgagggcacggtacaggccaacccctcctgttgatccatctatcttggcaagcatgaag
attgtaggttccatcggctatgcacctaatttgcacaacaggaaaaggaaccaggtgcct
tacaagttcagcagaaacaaaggaccaaaatcaaactccaatgagaattcaacaggcaag
aatgaagacggcatagcggtgcatgtcccctggagatatcgcaaaatggagataaaatac
agcaagttggggatggatgactttgactatgaccagtacaatcgcacaagtttttcggga
ctggatatgtctcttccaaattcttactgcaatccaatgcttcagatgttttactatgtt
gcccctcttcgagctctcatgatgtcccacttgtgcgagcgagagttctgcttggtgtgt
gaactgggcttcctgtttcacatgctggatgtcagcatgggtcaggggataccttgccat
gcatctaacttcctcagagcatttagaacaatacctgaagcatcagccatgagtctcaca
ctgtctgatcaggataacagagcaaagattaactttgctctgaagattcagagttggaat
aggtttgtactacaacagttgcacaccgaaacactcgaagaaagagtacctgcagaaggt
cgaccgccacctgtgccagataccccacaagaagcacttaccgaagatacacaggccggc
caacccgctgaggtgccagtaccagaagagaaagccgttgttatagatggcaaaaccatt
gaatgccaggacaagcgtgagttttcgcctgttgctgacatatttggatcccacactgtc
agcgttaacagatgtacaaggtgcaaccatgagatccacaaggaaaccacgtcattactt
gtcaacctctcctatcctgaatttaatagtgactcgtcaccaggcagcatccccttctcc
tctgtggtggagcgcagtatgagcttagaacagacgagacaggcttggtgtgactcctgc
actcggtatcagcccatagagcagtggaggcgctacaagaaactgcccaatatccttgcc
atgaactgtgggcttgatagtgctcaggacattaaattttggcggcaccagtttgagatc
ttgctgacagaagtgcgtgacaagctgaagaaagaggagggggagaaaaaggaggcagaa
ggcaagaacggatcagaggagagagaaaataggtttcctgacagagtcacaccgtcactt
agtacaggtagcccatcaacaccttcaaaacgctatcctgagaattcgacaccgcagtcc
caagggcgaccctgccgatatggtaatgcttgctcaagatctgactgcaggttctggcat
ccaggtcgcgatgggggagaaggtcaacagccagtccatgtcctaagccttctagatcag
accatggagtactcgtgggtgccattgggcatgagagcaaaactgaatgaaaatgggacg
gtttccttgtctgacatcagcaaagcagagcttgaagagggagttgaagatgagagcggt
gttatctatgatctcgtgggtgttgtgtcgcacatctgtgaccctcgttaccctgacaag
aacaacctggtggcgtgtatcaaggttggcccaagctaccatgtgcaggcaaaggtgtca
tctgtttcccattggtacctctttaatgatataagcattcaacccatagcccctgaagaa
gcggtttggttcccttgtggttggaagaccccatgtgtcatgtactggcagcgcagacag
ttgccacaagagatacagaaccttgggcctgttaatcccataacagctgatgtgtttgga
gaggataagtctcttgctcaacgagggaggaaaagaattacttttacacctttaacagca
gatgaaatgcctggagaaggtgatttggtggctatggatgcagagtttgtgaaccttcac
caagaggaagcagagatacgtagtgatggcacacggactaccatcaaaccttcacataaa
tcggttgcaagaatcacttgcatacgaggacaaggacccctggaaggtaccccattcctg
gacgattatatatcaacacaagagcaggttgtggactacctgacccagttctcgggcatc
aaaccaggagacttggatgccaacttctctcaaaaacacttgaccaccttgaagagtacc
tacgtgaaattgagatacctggtggacaagggtgttaagtttgtgggacacggcctcaag
aatgacttcagggtgatcaacatgacagtgccaatgagccagctgatagacaccgtccac
ctcttccacatgtcgcataatcgcatggtgtcgctcaagttcttggcttggcatttctta
aaactcaagatccagagtgtaactcacgacagcattgaggacgccaggactgcccttgcg
ctgtatcagaaatactgccagttaaaggccagtggagacctagtgatggaactgcagaat
ctctatgaggcggggaagaaagcccagtggaaggtccccggggaagaagaggaggagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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