KEGG   Phaseolus vulgaris (common bean): PHAVU_001G023500g
Entry
PHAVU_001G023500g CDS       T03093                                 
Name
(RefSeq) hypothetical protein
  KO
K13126  polyadenylate-binding protein
Organism
pvu  Phaseolus vulgaris (common bean)
Pathway
pvu03015  mRNA surveillance pathway
pvu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pvu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    PHAVU_001G023500g
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PHAVU_001G023500g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvu03019]
    PHAVU_001G023500g
   03041 Spliceosome [BR:pvu03041]
    PHAVU_001G023500g
Messenger RNA biogenesis [BR:pvu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     PHAVU_001G023500g
   mRNA cycle factors
    Stress granule specific factors
     PHAVU_001G023500g
Spliceosome [BR:pvu03041]
 Complex C
  Other components
   Complex C specific factors
    PHAVU_001G023500g
SSDB
Motif
Pfam: RRM_1 PABP RRM_occluded RRM_5 RRM_3 MARF1_RRM1 RRM_7 SET1_RBD
Other DBs
NCBI-GeneID: 18640147
NCBI-ProteinID: XP_007160868
UniProt: V7CRP8
Position
1:complement(2069424..2074542)
AA seq 651 aa
MAQIQAQQHQSPVSAPPNGVAPAPNANQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVS
VRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTA
NIFIKNLDKAIDHKALHDTFSSFGHILSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKL
NGMLINDKQVYVGHFLRKQDRDNALSKTKFNNVYVKNLSDSTTDEELKKVFGEYGTITSA
VVMRDADGKSKCFGFVNFENPDDAAKAVEGLNGKKFDEKEWYVGKAQKKSERELELKGRF
EQSIKEAADKFQGVNLYLKNLDDTLSDENLRDMFAEYGTISSYKVMRDPNGISRGSGFVA
FSTPEEASRALAEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMP
LYPPGAPGIGQQFMYGQGPPTMIPPQAGFGYQQQLVPGMRPGGGPMPSFFVPLVQQGQQG
QRPGGRRGAGPVQQPQQPLPMMQQQMLPRGRVYRYPPGRNMQDVPLQGVAGGMMSVPYDM
GGLPIRDSVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEM
DQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQTNPADQLASLSLNDNLVS
NT seq 1956 nt   +upstreamnt  +downstreamnt
atggcgcagattcaggcacagcagcaccagagtccagtctcggctcctccaaatggcgtc
gctccggcgcccaacgcgaaccagttcgtgacgacctcgctgtacgtcggcgatcttgac
cagaatgtcaacgactcgcagctctacgatctgttcaaccaggtcgggcaagtcgtttct
gttcgcgtctgcagggacctgaccactcgtcgttcactcggttacggttatgtcaattac
agtaaccctcaggatgcggcgagggcattggatgtgctgaatttcactccactgaacaac
aaatctattaggatcatgtattctcatcgggatcctagtattcggaagagtggcactgcg
aatatttttatcaagaatttggataaggctattgaccacaaggccttacatgatactttt
tcttcttttggacacattctttcttgcaaaatagcaacagatgcttctggcctgtctaaa
ggttatggttttgttcaatttgacaatgaagaggctgcacagaatgctatagacaagtta
aatggcatgctgatcaatgataagcaggtctatgtaggacatttcctgcgaaagcaggat
agagataatgctctcagtaagacaaaattcaataatgtctatgtgaaaaacctatcagat
tcaaccacagatgaagagttgaagaaagtttttggagaatatggtaccattactagtgct
gtagtaatgagagatgcggatggtaaatctaagtgttttggtttcgtcaattttgaaaac
ccagacgatgctgccaaagctgttgaggggcttaatgggaagaaatttgatgagaaggag
tggtatgttggaaaagcccagaaaaaatctgagcgtgaacttgaattgaaaggaagattt
gagcagagtataaaggaagctgctgacaaatttcagggtgtgaacttgtatctcaagaac
ttggatgatacgctcagtgatgaaaatcttagagatatgtttgctgagtatggtacaata
tcttcgtacaaggtaatgcgtgacccaaacggaattagtagaggatcgggatttgttgca
ttttcaactcctgaagaggcatctcgtgctcttgctgagatgaatggtaaaatgattgct
ggaaaacctctgtatgttgccctggcacagagaaaagaagagagaagagcaaggttacag
gcacaattttcacagatgaggcctgttgcaattacgccatctgtggcaccccgaatgcct
ctctatcctcctggtgctcctggtataggacaacaatttatgtatgggcaaggacccccc
accatgattccaccccaagctggatttggttaccagcagcaactagttcctggaatgagg
cccggtggtggtccaatgcctagcttctttgttcctctggttcagcaggggcaacaaggg
cagcgtccaggcggtcgccgtggagcaggtcctgtgcaacaacctcaacagccgttgcca
atgatgcagcagcagatgcttccaaggggacgagtctatcgttaccctcctggccgcaac
atgcaagatgtcccacttcaaggtgtagctggtgggatgatgtcagtcccctatgacatg
gggggtctcccaatccgtgattctgtgggacagccaatgcctattcaagctttggctact
gcccttgccaatgctccacctgaacagcagaggactatgctgggtgaagctttatacccg
cttgtggatcagctggaacatgacgcagcagcaaaggtcactggcatgcttttggagatg
gatcagcctgaagtccttcatctgattgagtcaccggatgctctgaaggccaaagttgct
gaagccatggatgtactgagaaatgttgctcaacagcaaaccaaccctgctgatcaactt
gcctctctctctctcaatgacaatctcgtgtcttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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