KEGG   Phaseolus vulgaris (common bean): PHAVU_001G051700g
Entry
PHAVU_001G051700g CDS       T03093                                 
Name
(RefSeq) hypothetical protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:3.6.4.13]
Organism
pvu  Phaseolus vulgaris (common bean)
Pathway
pvu03013  Nucleocytoplasmic transport
pvu03015  mRNA surveillance pathway
pvu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PHAVU_001G051700g
  09122 Translation
   03013 Nucleocytoplasmic transport
    PHAVU_001G051700g
   03015 mRNA surveillance pathway
    PHAVU_001G051700g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvu03019]
    PHAVU_001G051700g
   03041 Spliceosome [BR:pvu03041]
    PHAVU_001G051700g
Messenger RNA biogenesis [BR:pvu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     PHAVU_001G051700g
Spliceosome [BR:pvu03041]
 Complex C
  Other components
   EJC/TREX
    PHAVU_001G051700g
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    PHAVU_001G051700g
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Ribosomal_L26
Other DBs
NCBI-GeneID: 18640435
NCBI-ProteinID: XP_007161216
UniProt: V7CVC6
Position
1:5858480..5866501
AA seq 426 aa
MGDTKTEAYEEDLLDYEDEEEKEPEGANKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLC
HTRELAYQICNEFERFSTYLPELKVAVFYGGVNIKVHKDLLKNECPSIVVGTPGRILGLA
RDKDLSLKNVRHFILDECDKMLESLGMRKDVQAIFKMTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSRA
AELDKLLRECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDT
ASYMPS
NT seq 1281 nt   +upstreamnt  +downstreamnt
atgggggatacaaagactgaagcgtacgaggaggaccttcttgactatgaggacgaagaa
gagaaggagcctgaaggtgctaataaagtcaacggtgaagctgtaaagaagggttatgtt
ggaattcatagttcaggattcagagactttttgctgaagccagagcttcttcgggctatt
gtggactctggatttgagcacccttctgaagtgcaacatgagtgcatacctcaagctata
cttggaatggatgtgatttgtcaagctaaatctggaatgggaaaaactgctgtctttgtt
ctatctaccctgcagcagattgaccctgttgcaggacaagtttccgcacttgtcttgtgt
catacaagggaattagcataccagatatgcaacgaatttgaaaggtttagtacctaccta
cccgaactgaaggttgctgtcttttatggtggcgtcaacattaaagttcacaaggatcta
ttgaagaatgaatgccccagtattgttgttggtacacctggaagaatacttggattggca
agggataaggacctttctttgaagaatgtcaggcatttcattttagatgaatgtgataag
atgctagaatctctgggcatgaggaaagatgtgcaagctattttcaagatgacaccccat
gataagcaagttatgatgttttctgcaacactcagcaaggaaatacgtcctgtctgcaaa
aagtttatgcaagatccaatggaaatttatgttgatgacgaagcaaagttgacccttcat
ggacttgtgcagcactacatcaaattgaaagaggaggagaagaacaggaagttaaacgac
cttcttgatgcactggacttcaatcaaattgttatctttgtgaaaagtgttagtagagca
gcggagctggacaaactgcttagagagtgcaacttcccatctatttgcattcactctgga
atgtctcaggaagaaaggttaaagcgttataaaggttttaaagagggtcatacaagaatt
ctagttgcaacagatttggttggcaggggaatcgatatcgaacgtgtgaatatagttata
aactatgacatgccagattctgctgatacatacttgcacagggttggccgtgctggaaga
tttggaaccaagggccttgcaattacatttgtttcatgttccactgatgttgatgttctc
aacaatgttcaatccaggtttgaagtggatataaagcagcttcctgagcagattgataca
gctagctacatgccatcgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

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