KEGG   Phaseolus vulgaris (common bean): PHAVU_006G049000g
Entry
PHAVU_006G049000g CDS       T03093                                 
Name
(RefSeq) hypothetical protein
  KO
K03131  transcription initiation factor TFIID subunit 6
Organism
pvu  Phaseolus vulgaris (common bean)
Pathway
pvu03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:pvu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PHAVU_006G049000g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvu03021]
    PHAVU_006G049000g
   03036 Chromosome and associated proteins [BR:pvu03036]
    PHAVU_006G049000g
Transcription machinery [BR:pvu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     PHAVU_006G049000g
   Coactivators
    SAGA/TFTC/STAGA complex
     PHAVU_006G049000g
Chromosome and associated proteins [BR:pvu03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     PHAVU_006G049000g
    STAGA complex
     PHAVU_006G049000g
    TFTC complex
     PHAVU_006G049000g
    SAGA complex
     PHAVU_006G049000g
    SLIK complex
     PHAVU_006G049000g
SSDB
Motif
Pfam: TAF6_C TAF TFIID-31kDa CBFD_NFYB_HMF CCDC47
Other DBs
NCBI-GeneID: 18627812
NCBI-ProteinID: XP_007146537
UniProt: V7BPM2
Position
6:16387144..16392517
AA seq 535 aa
MSFVPKETIEVIAQSIGITNLSPDVALALAPDLEYRIREIMQESIKCMRHSMRTFLSTED
VDTALALRNLEPIYGFTSNDPPRFKRAAGHKDLFYIDDKDVDIKDLIEAPLPKAPLDTSI
TSHWLAIEGVQPAIPENAPVEAPSEIRKSEYKEDGLSVDVKLPVKHLITRELQLYYEKIT
DLTLNKSGSIPFRRALVSLATDSGLHPLVPYFTCFVADEVARNLHNLSVLFALMRLVRSL
VQNSQIHIELYLHQLMPPIITCIVAKKIGNRLSDDHWELRNFSANLVASICHRFGHIYHN
LQPRVTKTLLHSFLDPSKALPQHYGAIKGIEALGSRLIHLLILPNLEPYLHLLEPEMQPE
KQKNEMKRHEAWQVYGALLGAVGQCVHEKVKMFSNLLCRPTRVTSRGSGKAIIPMSGKRK
ASADNLMQQQPPMKKLSTDGHGGVIPMNSMSVDMPGSTGGFSTMMGAPTMSMNRQISTDN
VAGREVVDQQRKVSATLAQAWKDDIDAGNLVSSVVELFGERVLPFVPNPEAFMFL
NT seq 1608 nt   +upstreamnt  +downstreamnt
atgagtttcgtgccaaaggaaacaatcgaagtcatcgctcagagcataggcatcaccaat
ttgtcccccgatgttgccctcgctctcgccccggatcttgaatatcgcattcgcgaaatc
atgcaggagtcgataaaatgcatgcgccattcgatgagaacctttcttagtacagaggat
gtggatactgcacttgcattgagaaatttggagcctatatatgggttcacctctaatgat
cctccgaggttcaaaagagctgctggacataaggatctgttctacatcgatgacaaagat
gtggatatcaaagatcttattgaagctcctttaccaaaagcaccccttgatacatcaatt
accagtcactggttggctattgaaggcgtgcaacctgcaattcctgaaaatgctccagtt
gaagctccctctgaaataagaaaatctgagtataaggaagatgggctttctgttgatgtt
aaattacctgtcaaacatttaataacaagggagcttcagctctactacgagaaaataact
gatctaacattgaataagtctggatccattccgttcagaagagcattggttagcttggca
acggactcaggactccatcccttagttccgtatttcacatgctttgtggctgatgaggtg
gcacgtaatttacataatttatctgttttatttgccttgatgcgcctagtgcggagcctt
gtgcaaaattctcagatacacatagaactttatttacatcaattgatgccgcctatcatt
acttgcattgttgcaaaaaagataggaaacagactatctgacgatcactgggagcttagg
aacttcagtgctaatcttgttgcttcaatatgccacagatttgggcatatttatcacaat
ctgcagccacgcgtgacaaagacacttcttcattctttcttggacccttcaaaagctctg
cctcaacactatggtgcaattaaagggatagaagctcttggatcaagactaattcacttg
cttatacttccaaatctcgagccatatttgcatcttcttgagccagaaatgcaacctgag
aaacaaaaaaatgaaatgaagaggcatgaggcttggcaggtttatggagctttgttgggt
gcagtaggacaatgtgtgcatgaaaaggtcaaaatgttcagcaatttgttatgtcgtcca
actcgggttacttcgagaggcagtggtaaagccattattccgatgtcaggcaaacgaaaa
gccagtgccgacaatctgatgcagcagcaacctccaatgaagaaactttctacagatggc
catggaggtgtaataccaatgaactccatgtcagttgacatgccaggctcaactggggga
ttttccaccatgatgggggctcctactatgtcgatgaatcgtcaaatttcaaccgacaac
gtggctgggagggaggttgtagatcaacaaagaaaggtgtctgccactcttgctcaggct
tggaaggatgacattgatgcaggaaatttggtgtcatcagtggttgaattgtttggcgaa
agggtgttaccatttgtccctaaccctgaagcatttatgtttttgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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