KEGG   Phaseolus vulgaris (common bean): PHAVU_008G098700g
Entry
PHAVU_008G098700g CDS       T03093                                 
Name
(RefSeq) hypothetical protein
  KO
K13126  polyadenylate-binding protein
Organism
pvu  Phaseolus vulgaris (common bean)
Pathway
pvu03015  mRNA surveillance pathway
pvu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pvu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    PHAVU_008G098700g
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PHAVU_008G098700g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvu03019]
    PHAVU_008G098700g
   03041 Spliceosome [BR:pvu03041]
    PHAVU_008G098700g
Messenger RNA biogenesis [BR:pvu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     PHAVU_008G098700g
   mRNA cycle factors
    Stress granule specific factors
     PHAVU_008G098700g
Spliceosome [BR:pvu03041]
 Complex C
  Other components
   Complex C specific factors
    PHAVU_008G098700g
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded Nup35_RRM
Other DBs
NCBI-GeneID: 18622394
NCBI-ProteinID: XP_007140277
UniProt: V7B724
Position
8:complement(10444548..10447990)
AA seq 597 aa
MSLFVGDLDQNINEQQLHDLFNDVGQVVSVRICKDYQTKTSLGYGYVNFSSAQHAAKALD
VLNFTPLNGKPIRVMYSIRDPSFRNSGIANVYIKNLDKSIDDKCLFDVFSSFGNILSQRV
ARDASGESRGYGFVQFETEASAKEAIQKLNGMLLNNKQLYVGPFVRKEDRESFHGTDAKF
NNVYVSNLSKTLTDADLQIIFGEYGTITSAVVMKDVVGESKGFGFVNFANADDAAKARDS
LDGIFVCGQKWYVGRAMRKSERELDVKGVLNRKPYFPKEDTNLYIKNLDDSIGDEELKEY
FSEFGAITSACVMRDANGFSKGSGFVAYTDKEAANRALESMNGRMVAGKPLYVAIAQTKE
ERKARLQALFSEPRASPTVPNLAPQHPMYTIRAPGLEPPFLHRQTHPDFITQASINLQQH
LARGLTPTGPPITNFYAVHGHPQPGGYLQEAPVQPLMLHPQMLPTGNFYQGPPGPNMQNI
HPAGVPGEMILFGCVPPVPLQALASAVANANPELKRILLGESLYPLVEKLEPDAASRVTG
MLLEMDHPEVLHLIESPRALSAKVAEAMASLIQVEEQQPSCPADELGFVSLDDDPWF
NT seq 1794 nt   +upstreamnt  +downstreamnt
atgtcgttgttcgtcggggatcttgaccagaacatcaacgaacagcagctccatgatctc
ttcaatgacgttggccaagttgtttccgttcgaatttgcaaggactatcaaactaagacc
tcccttggttacggctacgtcaatttcagtagtgctcagcatgccgcaaaagcattggat
gtgctaaatttcactccgttgaacgggaaacccattagggtaatgtactctattcgggac
cccagttttcgtaatagtggtatagctaacgtttatataaagaatttggataagtcaatc
gatgacaagtgtctattcgatgtcttttcgtcttttgggaatattctatctcaaagagtt
gcgagggatgcttctggcgagtctagaggctatggttttgtgcagtttgagacggaagca
tctgcaaaagaagcgattcaaaagttaaacggcatgctgctcaataataaacagctctat
gtgggtcctttcgtgcgaaaggaggatagagagagttttcatggtactgacgcgaagttt
aataatgtttatgtaagtaacctgtcaaagacattaacggatgctgacctgcagataatt
tttggagaatatgggactattactagtgctgtagtgatgaaagatgtagttggtgaatca
aaaggttttggttttgtcaattttgcaaacgcagacgatgctgctaaagctcgggacagt
cttgatggcatttttgtttgtggtcagaagtggtacgttggaagagccatgagaaaatct
gaaagggagcttgatgtgaaaggggtactgaataggaagccttactttcctaaggaagat
acaaacttgtatataaagaacttggacgatagtattggtgatgaagaactcaaagaatat
ttctctgagtttggtgcaataacctcagcgtgtgttatgagagatgcaaatggatttagt
aaaggatctggatttgttgcatatacagataaggaggcagcaaatcgggctcttgaatcg
atgaatggtcgaatggttgctggcaaacctctctatgttgccattgcacagacaaaggaa
gagagaaaagcaaggttacaggcattattttcagaacctagggcttctccaacagtccct
aatcttgcacctcagcatccaatgtacactatacgggctcctgggctagaaccaccattt
ttgcataggcaaacacatccagacttcataactcaagcttcaattaatttgcagcagcat
cttgctcgcggattgacgccaactggtcctccaataacaaacttctatgcagttcatggg
cacccgcagccaggaggatacctacaagaagctcctgtgcaaccgctcatgttacaccca
cagatgcttccaactggcaatttctatcaaggtcctcctggccccaacatgcaaaatatt
catcccgcaggagtaccgggagaaatgatcctttttggctgtgttccgccggtaccactt
caggccttggcatcagccgttgccaatgctaatcctgaactcaagaggattctgcttggt
gaaagtttataccctttagtagaaaagctggagcctgatgcggcatcaagggttactggt
atgcttttagagatggaccaccctgaggtgttacatctgattgagtcgccacgtgctctc
tcggcaaaagttgcggaggccatggcttcattgatacaagtagaagaacaacaaccaagc
tgcccagctgatgaacttggttttgtctctctcgatgacgatccatggttttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system