KEGG   Phaseolus vulgaris (common bean): PHAVU_011G1853000
Entry
PHAVU_011G1853000 CDS       T03093                                 
Name
(RefSeq) hypothetical protein
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
pvu  Phaseolus vulgaris (common bean)
Pathway
pvu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pvu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PHAVU_011G1853000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvu03019]
    PHAVU_011G1853000
   03012 Translation factors [BR:pvu03012]
    PHAVU_011G1853000
Enzymes [BR:pvu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     PHAVU_011G1853000
Messenger RNA biogenesis [BR:pvu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     PHAVU_011G1853000
Translation factors [BR:pvu03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    PHAVU_011G1853000
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C dsrm HA2_N Dicer_dimer
Other DBs
NCBI-GeneID: 18616617
NCBI-ProteinID: XP_007133513
UniProt: V7AIS4
Position
11:46199081..46209866
AA seq 668 aa
DALSKSNFENYSSRARDSMASWAPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISS
LRDQLKAHPLLGDPNRILLLTCHGSMATSEQKLIFEKPPPNIRKVILATNMAEASITIND
IVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPKCVYEA
FSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPEPRTVQNAIDFLKLIGALDE
KENLTNLGSFLSILPVDPKLGKMLIMGAIFRCFDPVLTVVAGLSVRDPFLLPQDKKDLAG
TAKSRFSAKDYSDHMALVRAYEGWKDAEREGSSYEYCWRNFLSAQTLQAIHSLRKQFSFI
LKDAGLVDADTSMINKLSHNQSLVRAIICSGLFPGIASVVHRETSMSFKTMDDGQVLLYA
NSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAGHLKMLDG
YVDFFMDPNLADCYLKLKEELDKLIQKKLEDPSIDIHKEGKYLVLAVQELVSGDQCEGRF
VFGRESQKPRASNRVSNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRAL
VEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNQHEDDKSPPDVTDNMLKILGKR
RKSKRRHD
NT seq 2007 nt   +upstreamnt  +downstreamnt
gatgctctttcaaaatcaaactttgagaactacagctccagggcacgtgattcaatggca
tcttgggcacctgactgcatagggtttaatctcattgaggctgttctatgccatatatgt
cggaaggaacgaccaggtgctgtcttagtgtttatgacgggatgggaggatataagttcc
ttaagagatcaacttaaagcacatcctcttttaggagatcccaataggattctacttcta
acgtgtcatggttcaatggcaacttcagagcagaaactcatatttgagaaaccacctcca
aatataaggaaagtaatacttgctacaaatatggctgaggcaagtattacaatcaatgac
atagtttttgtggtcgattgtggaaaagcaaaagagacaacatatgatgctttaaataac
acaccttgtcttctaccttcttggatatcacaagcatctgcacgtcagagaaggggtagg
gctggtcgtgtgcagccaggagaatgctaccacctttaccccaaatgtgtttatgaagcc
ttttctgaatatcaacttcctgaactactgagaacacctttgaactctctttgcttgcaa
ataaaaagtttgcaggttgagagcataggagagttcttatcagcagctttacaggcacca
gagccacgaaccgttcaaaatgctattgatttcctcaagttgattggtgcactagatgaa
aaagaaaatcttacaaatcttgggagttttctctctatacttcctgtagatcccaagctg
ggcaaaatgttaataatgggagctatatttcgatgctttgatcctgttcttacagttgta
gctggccttagtgtcagggatccgtttcttttgccccaagacaagaaggatttagcaggg
acagcaaagtctaggttttctgccaaagattacagtgatcatatggctcttgttcgagca
tatgaaggatggaaagatgcagaaagagaaggatcatcttatgaatactgctggagaaat
tttctctctgcccaaactcttcaggctattcattcacttcggaagcagtttagcttcatc
ttgaaagatgctggcttggtagatgctgatacaagcatgattaacaaattgagtcacaat
cagtctcttgtgcgtgcaatcatttgttctggactctttcctggcatagcatcagtggtg
cacagggagacatccatgtcatttaaaacaatggatgatggccaggttttattatatgct
aattcagtgaatgcacgttaccagaccattccatacccatggttggtttttggcgagaaa
gttaaggtcaatgcagttttcatccgtgattccactggtgtatctgattcaatacttatc
ctgtttggtggtgctctaagtaatgggatacaggctgggcatctgaaaatgttagatgga
tatgttgacttcttcatggatcctaatttagccgactgctatttgaagcttaaggaagag
ctcgataagcttatccagaagaagcttgaagatcctagcattgacattcacaaggaaggg
aagtacttggtgcttgctgttcaggagctggtttccggggatcaatgcgaaggaagattt
gtgtttggtcgtgaaagccagaagcctagggcctctaatagggtctctaatgatgaaaat
aaattcacaaaagatgggacaaatcccaagagcttgctgcaaacactgttgatgcgagca
ggacactcccctccaaaatacaaaaccaaacatctcaagacgaatgagtttagggcactg
gtggagtttaagggaatgcaatttgttggcaaaccaaagagaaacaagcaacttgcagaa
agggatgctgctatagaggcattggcttggttgactcacacttctgacaacaatcagcat
gaagatgataaatctcctcccgatgtcactgataacatgctaaaaatcctagggaagcgt
agaaaatcaaagcgacgccatgattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (20)   

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