KEGG   Pyrus x bretschneideri (Chinese white pear): 103939668
Entry
103939668         CDS       T03446                                 
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
pxb  Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pxb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103939668
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pxb03019]
    103939668
Enzymes [BR:pxb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     103939668
Messenger RNA biogenesis [BR:pxb03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     103939668
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 103939668
NCBI-ProteinID: XP_009348051
Position
Unknown
AA seq 729 aa
MNTHRPARALSRAISRAISHSCFSSSSSSSSSLKQQSSTFPLKNVTKSNFEPALADLRRH
VAAADFVAIDLEMTGITSSPWRDSLEFDRADVCYLKVKDSAEKFAVLQFGVCPFRWDSSK
RSFIAHPHNFYIFPRQELPLAGPPYEFLCQTTSIDFLAKYQFDFNVCIHEGISYLSREQE
SEALRRLSLAYDDELLARCSNLKEPMHMPVVKMADTLFAERMKNSFTEWRDGLLRSSKGG
FQFQGDSNDSQQLQTIFFKLRPALSLRGFTSHQLKLIQMVITRHFQDLFYVRINGEKSCQ
QQLVVRTESKDDRELLLNEVKDEHRREAEVKVQAAVGFRHVIDLLSSEQKLIVGHNCFLD
IAHVYSKFLGPLPSTAEEFVSTVNKYFPHVIDTKVLLNTDTVLQQRIKKSRTSLSSAFAL
LCPQIALGKKSTDSEVQMCVKVEVQVDDLRSSNWNSGAKHEAGYDAFMTGCVFAQTCSHL
GIDFQACSSSEKLAHNEKLQKQINHLYLSWSNGDIIDLTTGKKNAMSSGSNNHKKRYSQI
MSENVALIWGFPSKLKARDIRECISKVFGSTSVTSVFHLDETAVFVQFSKEKFVSEFLAL
KETLERSDGPVSVLHPLAGLLEGGSTRAANYETYKEICSSPSAKGFFADQAEAVGIKWKT
KLVESKEASETLKRESFDENSEVNPASKTENLRRSTTDTAENDPFCGRRAQYKIIDTLIA
SEGDQMRTN
NT seq 2190 nt   +upstreamnt  +downstreamnt
atgaacactcaccgcccggcgagggcgctgtcacgtgctatatcacgagccatatcccac
tcctgcttctcctcctcctcctcctcctcgtcgtcattaaaacagcaatcctcgaccttt
cctctgaaaaacgtgaccaaatcgaacttcgagccggctctggccgacctgcgccgtcat
gtcgccgccgcagacttcgtggccatagatctcgagatgactggaatcaccagctcgccg
tggcgcgactctctggagttcgaccgcgccgacgtttgctaccttaaggtcaaggactcg
gccgagaagttcgccgtgcttcagtttggcgtttgccccttccgatgggactcctccaag
cgctccttcattgctcatccgcacaatttctacatttttccgcgtcaagaacttccactt
gcaggcccaccatatgagtttctatgccagactacatcgatcgatttcttagctaaatac
cagtttgattttaatgtctgcatacatgaaggaatatcttatttatccagagagcaggaa
agtgaggcactgagacgtttgagtttggcatatgatgatgagttattggctagatgttca
aacttgaaggaaccaatgcacatgccagtggtcaagatggctgacactctcttcgctgaa
cggatgaagaactcattcactgaatggcgtgatggtttgttaagaagtagtaagggagga
ttccagtttcagggagactcaaatgactcccaacagttacaaaccattttcttcaagttg
cgtccagctcttagtctgaggggattcacttctcatcagcttaagttgattcaaatggtc
attacaaggcatttccaagatctcttttatgttcggataaatggtgaaaagtcctgtcaa
cagcaactagttgtgcggacagagtccaaggatgacagagagttacttctgaacgaggtg
aaggatgaacatcgtagggaagcagaggtgaaagttcaagctgcagttgggtttcgtcat
gttattgaccttctttcctcagaacaaaagttgattgttggtcacaattgctttcttgat
attgcccatgtatatagcaaattccttggccctcttccttcgactgctgaagaatttgtc
tctactgttaacaagtactttccacacgtcattgacaccaaagtactattaaacacggat
actgtgctccaacaacggatcaagaaatcccgaacatcactttcgtcagcatttgccttg
ttatgcccacaaattgctcttgggaagaaaagcactgattcggaagtccaaatgtgtgtg
aaagtggaagttcaggtggatgatttgaggtcctccaactggaattctggagccaaacat
gaagcgggatatgatgcttttatgacaggctgcgtctttgctcagacatgcagtcatctc
ggaattgattttcaggcctgttcgtcatctgaaaagttggcccacaatgagaagctccag
aagcagatcaaccatctatacctcagttggagtaatggagacattattgatttaaccact
ggtaagaagaatgcgatgtcttcggggtctaataaccacaaaaagaggtactcgcagatt
atgtctgagaacgttgctttaatctggggattcccatcaaaactcaaggcacgagacatc
agggagtgcatttcaaaagtctttggctcaacctctgttacgtctgtcttccacttggat
gaaactgcggtattcgttcagtttagcaaggaaaaatttgtctctgaatttctggctttg
aaggaaacattagagagaagtgatggtccagtctcagttttgcaccccctcgcgggactt
ttggagggtggaagcacccgagctgctaattatgaaacttacaaggaaatctgcagttca
cccagcgcaaaaggcttttttgcggatcaggctgaggcagttggtattaaatggaaaact
aaattggtagaatccaaggaagcatcagagaccctaaaacgggagagcttcgatgaaaat
agtgaagtgaatcctgcttcaaagaccgaaaatttgagaagaagtaccacagacaccgca
gaaaatgatccgttctgcgggcgtcgcgcacaatacaagatcatagataccttaattgct
tctgaaggcgatcaaatgagaactaattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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